View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15222_low_3 (Length: 559)
Name: NF15222_low_3
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Original strand, 48120578 - 48121102
Alignment:
| Q |
19 |
gtgtgtaacttgtttttcactagaagttcccaccagaatattgtgctgtccaatcaccaactttcttttaccatcactatcaacattacttagcattttg |
118 |
Q |
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| T |
48120578 |
gtgtgtaacttgtttttcactagaagttcccaccagaatattgtgctgtccaatcaccaactttcttttaccatcactatcaacattacttagcattttg |
48120677 |
T |
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| Q |
119 |
catatatcaatttttactgtcacaaactctgtcttcccaaccttaacttgtgctctttcaaatcctatcaattgtttcaatggaacaccactcactgcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48120678 |
catatatcaatttttactgtcacaaactctgtcttcccaaccttaacttgtgctctttcaaatcctatcaattgtttcaatggaacaccactcactgcct |
48120777 |
T |
|
| Q |
219 |
ctgaacttggtggctccaaaaacactaacaccacatgagatccatcaaaaggtccattgttcttcacaccaatcacaagcgaaaatgtcaaattgaaaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48120778 |
ctgaacttggtggctccaaaaacactaacaccacatgagatccatcaaaaggtccattgttcttcacaccaatcacaagcgaaaatgtcaaattgaaaca |
48120877 |
T |
|
| Q |
319 |
acttatggtggagatatcaattacttgatcatcaaggaagatattattaagtggttttgaaatggatgtgtttttctggatcattatggtggaaggagca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48120878 |
acttatggtggagatatcaattacttgatcatcaaggaagatattattaagtggttttgaaatggatgtgtttttctggagcattatggtggaaggagca |
48120977 |
T |
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| Q |
419 |
gatgctatgtgggtggagaatgtggagtagcttaatccatagccaaattcatagagggatttcccattgtaaaacctgtatgttcttccagggaaatttc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48120978 |
gatgctatgtgggtggagaatgtggagtagcttaatccatagccaaattcatagagggatttcccattgtaaaacctgtatgttcttccagggaaatttc |
48121077 |
T |
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| Q |
519 |
tactgctattggctctcatgttcat |
543 |
Q |
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| T |
48121078 |
tactgctattggctctcatgttcat |
48121102 |
T |
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