View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15222_low_6 (Length: 359)
Name: NF15222_low_6
Description: NF15222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15222_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 8406063 - 8405724
Alignment:
| Q |
11 |
cacagagcaagaaaacggagaaaatgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaaagaaaagacgctga |
110 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8406063 |
cacaaagcaagaaaacggggaaaatgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctga |
8405964 |
T |
|
| Q |
111 |
agattatgacagacttggaaatatagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatctactttt |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
8405963 |
agattatgacagacttggaaacatagctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacattt |
8405864 |
T |
|
| Q |
211 |
ataggcaa---tagttctttggctgcatttgttcctctcttggctggttcattggcttcttctgttaatacttttgagcatggtggacaagttggcatgg |
307 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||| |
|
|
| T |
8405863 |
attggcaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgcaatcaatacttttgaacatggtggacaagttggcatgg |
8405764 |
T |
|
| Q |
308 |
tttttgaaatgtatagaacttctgctggtttcttcaactt |
347 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
8405763 |
tttttgaaatgtatagagcttctgctggttttttcaactt |
8405724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 8395509 - 8395848
Alignment:
| Q |
11 |
cacagagcaagaaaacggagaaaatgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaaagaaaagacgctga |
110 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8395509 |
cacaaagcaagaaaacggggaaaatgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctga |
8395608 |
T |
|
| Q |
111 |
agattatgacagacttggaaatatagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatctactttt |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
8395609 |
agattatgacagacttggaaacatagctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacattt |
8395708 |
T |
|
| Q |
211 |
ataggcaa---tagttctttggctgcatttgttcctctcttggctggttcattggcttcttctgttaatacttttgagcatggtggacaagttggcatgg |
307 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| ||||||||| |
|
|
| T |
8395709 |
attggcaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgcaataaatacttttgaacatggtggacaaattggcatgg |
8395808 |
T |
|
| Q |
308 |
tttttgaaatgtatagaacttctgctggtttcttcaactt |
347 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |||||||| |
|
|
| T |
8395809 |
tttttgaaatgtatagagcttctgatggtttattcaactt |
8395848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 8375826 - 8376162
Alignment:
| Q |
11 |
cacagagcaagaaaacggagaaaatgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaaagaaaagacgctga |
110 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
8375826 |
cacaaagcaagaaaatggggaaaatgaataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctga |
8375925 |
T |
|
| Q |
111 |
agattatgacagacttggaaatatagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatctactttt |
210 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| |
|
|
| T |
8375926 |
agattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatcgacattt |
8376025 |
T |
|
| Q |
211 |
ataggcaatagttctttggctgcatttgttcctctcttggctggttcattggcttcttctgttaatacttttgagcatggtggacaagttggcatggttt |
310 |
Q |
| |
|
|||| | | ||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376026 |
gtaggtagtggttctttggctgcttttgttcctcttttggctggttcattggcttctgtaattaatacttttgagcatggtggacaagttggcatggttt |
8376125 |
T |
|
| Q |
311 |
ttgaaatgtatagaacttctgctggtttcttcaactt |
347 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
8376126 |
ttgaaatgtatagagcttctggtggtttcttcaactt |
8376162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 8412175 - 8411844
Alignment:
| Q |
16 |
agcaagaaaacggagaaaatgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaaagaaaagacgctgaagatt |
115 |
Q |
| |
|
|||||||| | || ||||||||| |||||||||||||||||||| |||||||||||| |||||| | ||| ||| | || |||||||| ||||||||| |
|
|
| T |
8412175 |
agcaagaagatggggaaaatgaacaatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagatt |
8412076 |
T |
|
| Q |
116 |
atgacagacttggaaatatagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatctacttttatagg |
215 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
8412075 |
atgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctacatttgtagg |
8411976 |
T |
|
| Q |
216 |
caatagttctttggctgcatttgttcctctcttggctggttcattggcttcttctgttaatacttttgagcatggtggacaagttggcatggtttttgaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8411975 |
caatagttctttggctgcatttgttcctctattgactggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaa |
8411876 |
T |
|
| Q |
316 |
atgtatagaacttctgctggtttcttcaactt |
347 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |
|
|
| T |
8411875 |
atgtatagagcttctgctggttttttcaactt |
8411844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 8434273 - 8433942
Alignment:
| Q |
16 |
agcaagaaaacggagaaaatgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaaagaaaagacgctgaagatt |
115 |
Q |
| |
|
|||||||| | || ||||||||| |||||||||||||||||||| |||||||||||| |||||| | ||| ||| | || |||||||| ||||||||| |
|
|
| T |
8434273 |
agcaagaagatggggaaaatgaacaatggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagatt |
8434174 |
T |
|
| Q |
116 |
atgacagacttggaaatatagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatctacttttatagg |
215 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
8434173 |
atgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctacatttgtagg |
8434074 |
T |
|
| Q |
216 |
caatagttctttggctgcatttgttcctctcttggctggttcattggcttcttctgttaatacttttgagcatggtggacaagttggcatggtttttgaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8434073 |
caatagttctttggctgcatttgttcctctattgactggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatggtttttgaa |
8433974 |
T |
|
| Q |
316 |
atgtatagaacttctgctggtttcttcaactt |
347 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |
|
|
| T |
8433973 |
atgtatagagcttctgctggttttttcaactt |
8433942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 45 - 347
Target Start/End: Complemental strand, 8431285 - 8430995
Alignment:
| Q |
45 |
atggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaatatagctttgaag |
144 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||| ||| |||| |||||||||| |||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
8431285 |
atggagtgaagaattagaaatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaag |
8431186 |
T |
|
| Q |
145 |
gtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatctacttttataggcaatagttctttggctgcatttgttcctc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
8431185 |
gtaaacaagagtttggcaattgcagggccattactctcaggaattgcagctataggatctacatttattggcaatagttctttggctgcttttgttcctc |
8431086 |
T |
|
| Q |
245 |
tcttggctggttcattggcttcttctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagaacttctgctggtttcttcaa |
344 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
8431085 |
t------------attggcttctgtaattaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctgctggttttttcaa |
8430998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 75 - 320
Target Start/End: Complemental strand, 8417197 - 8416952
Alignment:
| Q |
75 |
ggaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaatatagctttgaaggtaaacaagagtttggcaattgcagggcca |
174 |
Q |
| |
|
|||||||||||| ||| |||| |||||||| |||||||||||| |||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
8417197 |
ggaagttgttgaagtgataaagagaaaagatgctgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcagggcca |
8417098 |
T |
|
| Q |
175 |
ttactcacaggaattgcagctattggatctacttttataggcaatagttctttggctgcatttgttcctctcttggctggttcattggcttcttctgtta |
274 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||| | |||| |
|
|
| T |
8417097 |
ttactcacaggaattgccgctattggatctacatttataggcaatggctctttggctgcctttgttcctctattggctggttcattggcttctgcagtta |
8416998 |
T |
|
| Q |
275 |
atacttttgagcatggtggacaagttggcatggtttttgaaatgta |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8416997 |
atacttttgagcatggtggacaagttggcatggtttttgaaatgta |
8416952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 8439277 - 8439085
Alignment:
| Q |
11 |
cacagagcaagaaaacggagaaaatgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaaagaaaagacgctga |
110 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
8439277 |
cacaaagcaagaaaatggggaaaatgaataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctga |
8439178 |
T |
|
| Q |
111 |
agattatgacagacttggaaatatagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatc |
203 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8439177 |
agattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatc |
8439085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 8417398 - 8417203
Alignment:
| Q |
11 |
cacagagcaagaaaacggagaaaatgaataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaaagaaaagacgctga |
110 |
Q |
| |
|
|||| |||||||||| | ||||||||| || ||||||||| ||||||| |||||||||||| |||||| | ||| ||| | || |||||||| |||| |
|
|
| T |
8417398 |
cacaaagcaagaaaatagggaaaatgaacaacggatggagtaaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctga |
8417299 |
T |
|
| Q |
111 |
agattatgacagacttggaaatatagctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatctac |
206 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8417298 |
agattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctac |
8417203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 8368194 - 8368101
Alignment:
| Q |
248 |
tggctggttcattggcttcttctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagaacttctgctggtttctt |
341 |
Q |
| |
|
||||||| |||||||| || |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||| || ||| ||||| |
|
|
| T |
8368194 |
tggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattctt |
8368101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 341
Target Start/End: Original strand, 8401216 - 8401309
Alignment:
| Q |
248 |
tggctggttcattggcttcttctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagaacttctgctggtttctt |
341 |
Q |
| |
|
||||||| |||||||| || |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||| || ||| ||||| |
|
|
| T |
8401216 |
tggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattctt |
8401309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 248 - 341
Target Start/End: Original strand, 8422793 - 8422886
Alignment:
| Q |
248 |
tggctggttcattggcttcttctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagaacttctgctggtttctt |
341 |
Q |
| |
|
||||||| |||||||| || |||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||| || ||| ||||| |
|
|
| T |
8422793 |
tggctggagcattggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattctt |
8422886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 8403845 - 8403790
Alignment:
| Q |
270 |
tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagaa |
325 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
8403845 |
tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaa |
8403790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 8368303 - 8368247
Alignment:
| Q |
139 |
ttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagct |
195 |
Q |
| |
|
|||||| |||| |||| ||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
8368303 |
ttgaagataaataagacattggctattgcaggaccattactcactggaattgcagct |
8368247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 8401107 - 8401163
Alignment:
| Q |
139 |
ttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagct |
195 |
Q |
| |
|
|||||| |||| |||| ||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
8401107 |
ttgaagataaataagacattggctattgcaggaccattactcactggaattgcagct |
8401163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 8422684 - 8422740
Alignment:
| Q |
139 |
ttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagct |
195 |
Q |
| |
|
|||||| |||| |||| ||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
8422684 |
ttgaagataaataagacattggctattgcaggaccattactcactggaattgcagct |
8422740 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 194
Target Start/End: Complemental strand, 55336396 - 55336242
Alignment:
| Q |
40 |
aatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaatatagctt |
139 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||| || ||||| || |||||| |||||| ||||| ||||||||||||||||| | |
|
|
| T |
55336396 |
aatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcat |
55336297 |
T |
|
| Q |
140 |
tgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagc |
194 |
Q |
| |
|
||||| | ||||||||| ||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
55336296 |
tgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagc |
55336242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 37 - 325
Target Start/End: Complemental strand, 55330961 - 55330673
Alignment:
| Q |
37 |
aataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaaagaaaagacgctgaagattatgacagacttggaaatatag |
136 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||| |||| |||||| |||| || || |||| ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
55330961 |
aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaaagacttggaaatatag |
55330862 |
T |
|
| Q |
137 |
ctttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagctattggatctacttttataggcaatagttctttggctgcatt |
236 |
Q |
| |
|
| || ||||| || |||||||| |||| ||| || ||||||||||| |||||||||||||| || ||| | ||| |||| || | |||| | || || | |
|
|
| T |
55330861 |
cattaaaggttaataagagtttagcaactgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcagctat |
55330762 |
T |
|
| Q |
237 |
tgttcctctcttggctggttcattggcttcttctgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagaa |
325 |
Q |
| |
|
||| || | ||||||||||||| | | || || ||| ||||||| |||||||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
55330761 |
agttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaa |
55330673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 325
Target Start/End: Complemental strand, 55336151 - 55336105
Alignment:
| Q |
279 |
ttttgagcatggtggacaagttggcatggtttttgaaatgtatagaa |
325 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
55336151 |
ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaa |
55336105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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