View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15223_high_10 (Length: 220)
Name: NF15223_high_10
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15223_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 3055756 - 3055946
Alignment:
| Q |
13 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
112 |
Q |
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| T |
3055756 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
3055855 |
T |
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| Q |
113 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttac |
203 |
Q |
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| T |
3055856 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttac |
3055946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 3042936 - 3043126
Alignment:
| Q |
13 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3042936 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgattgacgttgattggtctatgtcagattctgtgcttcaaaagccttttact |
3043035 |
T |
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| Q |
113 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttac |
203 |
Q |
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| T |
3043036 |
gaagatcaatgtatgaaagtttgtatggaagattgctattgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttac |
3043126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 25125338 - 25125148
Alignment:
| Q |
13 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25125338 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgattgccgttgattggtctatgtcagattctgtgcttcaaaagccttttact |
25125239 |
T |
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| Q |
113 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttac |
203 |
Q |
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| T |
25125238 |
gaagaacaatgtatgaaagagtgtatggaagattgcttctgttctgtggctattttcaggttaggtgatagttgttggaaaaagaagttac |
25125148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 3063535 - 3063345
Alignment:
| Q |
13 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
112 |
Q |
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|||||| | ||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||||| | ||||||| ||||||||||| |||||||||| |
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| T |
3063535 |
agatgatccaagtaaaaagagaaatgatctctatgagtttgagattttgattgacactgattggcctctatcagattatgtgcttcaaaggccttttact |
3063436 |
T |
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| Q |
113 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttac |
203 |
Q |
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| T |
3063435 |
gaagaacagtgtaggaaatcttgtatggatgattgcttgtgttctgtggctattttcaggttaggtgatagttgttggaagaagaagttac |
3063345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 3034894 - 3035084
Alignment:
| Q |
13 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| | |
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| T |
3034894 |
agatgaaccaagtaaaaacagaaatgatctctatgagtttgagactatgactgacattgattggccttactcagattttgtgcttcaaaagccttttaat |
3034993 |
T |
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| Q |
113 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttac |
203 |
Q |
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||| | ||||||| | || ||||||||||||||||| | |||| ||||||||||||||||| ||||||||||| ||||| |||| ||||| |
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| T |
3034994 |
gaaaaacaatgtaaggaatcttgtatggaagattgcatgtgttatgtggctattttcaggtacggtgatagttgttggaagaagaggttac |
3035084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 3071188 - 3071023
Alignment:
| Q |
38 |
gatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttactgaagatcaatgtatgaaagcttgta |
137 |
Q |
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||||| ||||||||| || ||||| ||||| |||||||||| | |||||| | ||||||| || || |||||| || || ||||||| ||||||| ||| |
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| T |
3071188 |
gatctatatgagtttcaggttttgaatgacactgattggcctctatcagatgccgtgcttctaacgcgttttacagatgaacaatgtaggaaagctagta |
3071089 |
T |
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| Q |
138 |
tggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttac |
203 |
Q |
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| T |
3071088 |
tggaagattgcatgtgttctgtggctatttggaggttaggtgatagttgttggaagaagaagttac |
3071023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 3040794 - 3040883
Alignment:
| Q |
83 |
tcagattctgtgcttcaaaagccttttactgaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcagg |
172 |
Q |
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| T |
3040794 |
tcagatgccgtgcttctagagccttttactgaagaacgatgcatgaaagcttgcatggaagattgtttgtgttctgtggctattttcagg |
3040883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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