View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15223_high_12 (Length: 204)
Name: NF15223_high_12
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15223_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 5e-98; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 2106690 - 2106874
Alignment:
| Q |
1 |
ggctcctttgaattcatttagttttatatcctttcctaattggttagatattgttaagatttactcattgctactcttcattttttatacatttttcttt |
100 |
Q |
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| T |
2106690 |
ggctcctttgaattcatttagttttatatcctttcctaattggttagatattgttaagatttactcattgctactcttcattttttatacatttttcttt |
2106789 |
T |
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| Q |
101 |
tctaaacaatttaccaacatgttattgttttccaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatg |
185 |
Q |
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| T |
2106790 |
tctaaacaatttaccaacatgttattgttttgcaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatg |
2106874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 2098239 - 2098416
Alignment:
| Q |
9 |
tgaattcatttagttttatatcctttcctaattggttagatattgttaagatttactcattgctactcttcattttttatacatttttcttttctaaaca |
108 |
Q |
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| T |
2098239 |
tgaattcatttagtttcatattctt-cctaattggttagatattgttaagatttactcaccactactcttcattgtttatacatttttcttttctaaaca |
2098337 |
T |
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| Q |
109 |
atttaccaac--atgttattgttttccaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatg |
185 |
Q |
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| T |
2098338 |
atttaccaacatatgttattgttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatg |
2098416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 2047833 - 2047926
Alignment:
| Q |
1 |
ggctcctttgaattcatttagttt-tatatcctttcctaattggttagatattgttaagatttactcattgctactcttcattttttatacattt |
94 |
Q |
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| T |
2047833 |
ggctcctttggattcatttaattaatatattctt-cctaattggttagatattgttaatatttactcattgttactttccattttttatacattt |
2047926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 2088541 - 2088639
Alignment:
| Q |
90 |
catttttcttttctaaacaatttacca--acatgttatt-gttttccaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatg |
185 |
Q |
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| T |
2088541 |
catttttcttttctaaacaatatactaagatatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatg |
2088639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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