View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15223_high_2 (Length: 409)
Name: NF15223_high_2
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15223_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 15733897 - 15734276
Alignment:
| Q |
13 |
ccaaagcttatatccattaactctctactctcgcaggctttaattttcacacccccttcttttagttctgttattgaatgaatcatctggctctgacatc |
112 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15733897 |
ccaaagcttatatccatcaactctctactctcgcaggctttaattttcacacccccttcttttagttctgttattgaatgaatcatctggctctgacatc |
15733996 |
T |
|
| Q |
113 |
ctcttggctcttcgccaatgagtttcggtcctatgctgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggt |
212 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15733997 |
ctcttggctcttcgccaatgagtttcggtcttatgttgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggt |
15734096 |
T |
|
| Q |
213 |
ttttcgtgattcggattgaagcaattggtagaagaatttgaaagaaagattgtagaaactcatttgtagatgaagactattgtttttatcggttagctca |
312 |
Q |
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| T |
15734097 |
ttttcgtgattcggattgaagcaatcggtagaagaatttgaaagaaagattgtagaaactcatttgtggatgaagactattgtttttatcggttagctcg |
15734196 |
T |
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| Q |
313 |
aaaagttttgttaaaacaaacatcggaagttggttttcaagcattatcatctcgcgacgaatggttggtaacatccatct |
392 |
Q |
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| T |
15734197 |
aaaagttttgttaaaacaaacattggaagttggttttcaagcattatcatctcgcgacgaatggttggtaacatccatct |
15734276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 15727878 - 15728144
Alignment:
| Q |
13 |
ccaaagcttatatccattaactctctactctcgcaggctttaattttcacacccccttcttttagttctgttattgaatgaatcatctggctctgacatc |
112 |
Q |
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||||||||||||||||| || ||||||||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15727878 |
ccaaagcttatatccatcaattctctactctcacatgctttagttttcacaccccctttttttagttctgttattgaatgaatcatctggctctgacatc |
15727977 |
T |
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| Q |
113 |
ctcttggctcttcgccaatgagtttcggtcctatgctgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggt |
212 |
Q |
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||||||| ||||||||||||||||| || | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15727978 |
ctcttggttcttcgccaatgagttttggccttatgttgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggt |
15728077 |
T |
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| Q |
213 |
ttttcgtgattcggattgaagcaattggtagaagaatttgaaagaaagattgtagaaactcatttgt |
279 |
Q |
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| T |
15728078 |
ttttcatgattcggattgaagcaattggtagaagaatatgaaagaaagattgtagaaactcatttgt |
15728144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 18057284 - 18057666
Alignment:
| Q |
13 |
ccaaagcttatatccattaactctctactctcgcaggctttaattttcacacccccttcttttagttctgttattgaatgaatcatctggctctgacatc |
112 |
Q |
| |
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|||||||||||||||| || |||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || |
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| T |
18057284 |
ccaaagcttatatccaacaattctctattctcacaagctttaattttcacacccccttcttttagttcggttattgaatgaatcatctcgctctgacgtc |
18057383 |
T |
|
| Q |
113 |
ctcttggctcttcgccaatgagtttcggtcctatgctgtatctaagaagatcaagaacatgttcaattttgaacttgtaagatgtttgacattcaggggt |
212 |
Q |
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|||| |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
18057384 |
ctctcagctcttcgccgatgagtttcggtcttatgttgtatctaagaagatcaagaacatgttcaactttatacttgtaagatgtttgacatttaggggt |
18057483 |
T |
|
| Q |
213 |
ttttcgtgattcggattgaagcaattggtagaagaatttgaaagaaagattgtagaaactcatttgtagatgaagactattg---tttttatcggttagc |
309 |
Q |
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||||| || |||| || |||||| ||||||||||||||| |||||| ||| ||||||||||||| | | | |||||||| | |||| ||||| |
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| T |
18057484 |
ttttctcgactcgggtttaagcaaaccgtagaagaatttgaaggaaagagtgttgaaactcatttgtggtttaggactattggtcatgttattggttaat |
18057583 |
T |
|
| Q |
310 |
tcaaaaagttttgttaaaacaaacatcggaagttggttttcaagcattatcatctcgcgacgaatggttggtaacatccatct |
392 |
Q |
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||||| | |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
18057584 |
tcaaacaattttgttaaaacaaacattggaagttggttttcgagcattatcaactcgcgacgaatggttggtaacatccatct |
18057666 |
T |
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