View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15223_high_4 (Length: 378)
Name: NF15223_high_4
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15223_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 34261029 - 34261390
Alignment:
| Q |
1 |
gatgaccttgacactttgaaaatgagatggagcaagaagtcctggaagaaggcaagtgttatatggcgaaagaaatatctttatgtcttctgatttattt |
100 |
Q |
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| T |
34261029 |
gatgaccttgacactttgaaaatgagatggagcaagaagtcctggaagaaggcaagtgttatatggcgaaagaaatatctttatgtcttctgatttattt |
34261128 |
T |
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| Q |
101 |
tatcatagggtggtgtcataaatcaatttcttttttatggcaggttatcatatttgttgataactcaggtgcagatataattttaggtattttgccattt |
200 |
Q |
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| T |
34261129 |
tatcatagggtggtgtcataaatcaatttcttttttatggcaggttatcatatttgttgataactcaggtgcagatataattttaggtattttgccattt |
34261228 |
T |
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| Q |
201 |
gcaagggagctccttcggcgtgggagtcaggtttgcacacttaaatttatttgttgatttcattttgctttatatagaaattagagaaacttcaaatttt |
300 |
Q |
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| T |
34261229 |
gcaagggagctccttcggcgtgggaatcaggttcgcacacttaaatttatttgttgatttcattttgctttatatagaacttagagaaacttcaaatttt |
34261328 |
T |
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| Q |
301 |
ataatttgttttaagaactttaattagatccactgaactcttatttgtagaagacatgattc |
362 |
Q |
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| T |
34261329 |
ataatttgttttaagaactttaattagatccactgaacacttatttgtagaagacatgattc |
34261390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 34251109 - 34251376
Alignment:
| Q |
1 |
gatgaccttgacactttgaaaatgagatggagcaagaagtcctggaagaaggcaagtgttatatggcgaaagaaatat-----------------cttta |
83 |
Q |
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| T |
34251109 |
gatgaccttgacactttgaaaataagatggagcaagaagtcttggaaaaaggcaagtgtcatatggttaaagaaatatacaattcttataatgcacttta |
34251208 |
T |
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| Q |
84 |
tgtcttctgatttattttatcatagggtggtgtcataaatcaatttcttttttatggcaggttatcatatttgttgataactcaggtgcagatataattt |
183 |
Q |
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| T |
34251209 |
tgtcttctgatgtattttagccaagggtagtgtcataa-tcaatttctttttcatggcaggttatcatatttgttgataactcgggtgcagatataattt |
34251307 |
T |
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| Q |
184 |
taggtattttgccatttgcaagggagctccttcggcgtgggagtcaggtttgcacacttaaatttattt |
252 |
Q |
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| T |
34251308 |
taggtattttgccatttgcaagggagctccttcggcgtgggagtcaggtttgcacgcattaatttattt |
34251376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 362
Target Start/End: Original strand, 34251639 - 34251741
Alignment:
| Q |
259 |
ttcattttgctttatatagaaattagagaaacttcaaattttataatttgttttaagaactttaattagatccactgaactcttatttgtagaagacatg |
358 |
Q |
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||||||| |||||||| ||| |||||| ||||||| ||||| |||||||||| ||| ||||||||||||| ||||||||||| |||||| |||||||| |
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| T |
34251639 |
ttcatttcgctttataaagatcttagaggaacttcagattttttaatttgttt-aagtactttaattagattaactgaactcttgtttgtaaaagacatg |
34251737 |
T |
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| Q |
359 |
attc |
362 |
Q |
| |
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|||| |
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|
| T |
34251738 |
attc |
34251741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 20862103 - 20862008
Alignment:
| Q |
140 |
gcaggttatcatatttgttgataactcaggtgcagatataattttaggtattttgccatttgcaagggagctccttcggcgtgggagtcaggtttg |
235 |
Q |
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| T |
20862103 |
gcaggttatcatatttgttgataactcaggtgctgatattattttgggtattttaccgtttgccagagagcttcttcggcgtgggagtcaggtttg |
20862008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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