View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15223_low_1 (Length: 610)

Name: NF15223_low_1
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15223_low_1
NF15223_low_1
[»] chr3 (15 HSPs)
chr3 (1-593)||(9584799-9585391)
chr3 (324-587)||(763548-763808)
chr3 (22-278)||(763282-763538)
chr3 (473-524)||(783935-783986)
chr3 (474-523)||(1437864-1437913)
chr3 (479-524)||(9587327-9587372)
chr3 (481-524)||(43991827-43991870)
chr3 (470-524)||(14888745-14888799)
chr3 (488-523)||(2456106-2456141)
chr3 (482-517)||(2659297-2659332)
chr3 (481-523)||(771649-771691)
chr3 (326-396)||(7942483-7942553)
chr3 (413-519)||(13526474-13526580)
chr3 (220-258)||(13526699-13526737)
chr3 (159-191)||(9587031-9587063)
[»] chr2 (4 HSPs)
chr2 (487-524)||(33020180-33020217)
chr2 (481-524)||(33026521-33026564)
chr2 (481-524)||(33038018-33038061)
chr2 (490-523)||(7160913-7160946)
[»] chr7 (2 HSPs)
chr7 (465-523)||(27755555-27755613)
chr7 (483-523)||(24723213-24723253)
[»] chr1 (3 HSPs)
chr1 (474-523)||(51221341-51221390)
chr1 (326-394)||(51381438-51381506)
chr1 (480-524)||(51858467-51858511)
[»] scaffold0044 (2 HSPs)
scaffold0044 (482-524)||(89013-89055)
scaffold0044 (326-394)||(89143-89211)
[»] scaffold1004 (1 HSPs)
scaffold1004 (479-524)||(2010-2055)
[»] scaffold0760 (1 HSPs)
scaffold0760 (479-524)||(4505-4550)


Alignment Details
Target: chr3 (Bit Score: 581; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 9584799 - 9585391
Alignment:
Q  1 taacagtaataaaagctaagttaacataagttgtaatcgaatctccagataagtgacagaccataacatctaattaacaacatcaaggacaaggtgatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9584799 taacagtaataaaagctaagttaacataagttgtaatcgaatctccagataagtgacagaccataacatctaattaacaacatcaaggacaaggtgatat 9584898  T
Q  101 caaactctcgacatagacttctggattaaaataaccattaatgtcttgaggcactgacatattaaaagtaccacttttggaatcatagacagtaaacatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9584899 caaactctcgacatagacttctggattaaaataaccattaatgtcttgaggcactgacatattaaaagtaccacttttggaatcatagacagtaaacatc 9584998  T
Q  201 aattgcaccaaatttctataatacattagcacttggtcatcctccgtgatatataaagcatcgtcattgggattgagatccaaatcatgcaagtaaggag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9584999 aattgcaccaaatttctataatacattagcacttggtcatcctccgtgatatataaagcatcgtcattgggattgagatccaaatcatgcaagtaaggag 9585098  T
Q  301 catggtataattgagccaaatcatgcatgtaaggaacacggtacaatttactccacggctcttcattatcatatcccttcataatccaaatatccacaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9585099 catggtataattgagccaaatcatgcatgtaaggaacacggtacaatttactccacggctcttcattatcatatctcttcataatccaaatatccacaaa 9585198  T
Q  401 tttcttgaaacgtgcaaatatgcacaagcaatccatggattccctcaaggaccaactatctgtctccaaattaggcttcaaaagcttttgatacgactcc 500  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9585199 tttctcgaaacgtgcaaatatgcacaagcaatccatggattccctcaaggaccaactatctgtctccaaattaggcttcaaaagcttttgatacgactcc 9585298  T
Q  501 ttctccaaatcaagagaaacaatgttatgtgaagaactctgagaatcatatgccaacaaattaatggtacctctagcaaatactcctactgca 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9585299 ttctccaaatcaagagaaacaatgttatgtgaagaactctgagaatcatatgccaaccaattaatggtacctctagcaaatactcctactgca 9585391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 324 - 587
Target Start/End: Original strand, 763548 - 763808
Alignment:
Q  324 tgcatgtaaggaacacggtacaatttactccacggctcttcattatcatatcccttcataatccaaatatccacaaatttcttgaaacgtgcaaatatgc 423  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||  | |||||||||||||||||||||||| | || |||| |||||  |||     
T  763548 tgcatgtaaggaacacggtacaatttattccatggctcttcattatcatagtctttcataatccaaatatccacaaatgttttaaaacttgcaatgatgt 763647  T
Q  424 acaagcaatccatggattccctcaaggaccaactatctgtctccaaattaggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaat 523  Q
    |||||| ||||||  |  ||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  763648 acaagcgatccatcaacgccctcaaggtccaactatttgtctccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagagaaacaat 763747  T
Q  524 gttatgtgaagaactctgagaatcatatgccaacaaattaatggtacctctagcaaatactcct 587  Q
    ||| || ||||||||   |   |||| ||||||| |||||||||||||||||||||||||||||    
T  763748 gttgtgcgaagaact---actctcatgtgccaaccaattaatggtacctctagcaaatactcct 763808  T

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Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 22 - 278
Target Start/End: Original strand, 763282 - 763538
Alignment:
Q  22 taacataagttgtaatcgaatctccagataagtgacagaccataacatctaattaacaacatcaaggacaaggtgatatcaaactctcgacatagacttc 121  Q
    ||||||||||| || | |||||||  |||||||||| ||||||||||||||| ||| ||||| ||| |||||||||||| |||||||| ||||||||| |    
T  763282 taacataagttctagttgaatctcgcgataagtgactgaccataacatctaactaataacattaagaacaaggtgatattaaactctcaacatagactgc 763381  T
Q  122 tggattaaaataaccattaatgtcttgaggcactgacatattaaaagtaccacttttggaatcatagacagtaaacatcaattgcaccaaatttctataa 221  Q
    |||| |  || |||||||||| | |||| || |||||||||||||||||||||||||||| ||||||||||||| |||||||| | || ||| | |||||    
T  763382 tggactgtaaaaaccattaattttttgacgcgctgacatattaaaagtaccacttttggagtcatagacagtaaccatcaattcctcccaatgtttataa 763481  T
Q  222 tacattagcacttggtcatcctccgtgatatataaagcatcgtcattgggattgaga 278  Q
    || |||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  763482 taaattagcacttggtcatcctccgtgatatataaaggaccgtcattgggatagaga 763538  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 524
Target Start/End: Original strand, 783935 - 783986
Alignment:
Q  473 aggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  783935 aggcttcaaaagattttgatacgactcattctccaaatcaagagaaacaatg 783986  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 523
Target Start/End: Complemental strand, 1437913 - 1437864
Alignment:
Q  474 ggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaat 523  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||||||    
T  1437913 ggctgcaaaagcttttgatacgtctccttctctaaatcaagagaaacaat 1437864  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 479 - 524
Target Start/End: Original strand, 9587327 - 9587372
Alignment:
Q  479 caaaagcttttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  9587327 caaaagattttgatacgactcgttctccaaatcaagagaaacaatg 9587372  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 524
Target Start/End: Complemental strand, 43991870 - 43991827
Alignment:
Q  481 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    ||||||||||||| |||||| |||||||||||||||||||||||    
T  43991870 aaagcttttgataagactccgtctccaaatcaagagaaacaatg 43991827  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 524
Target Start/End: Original strand, 14888745 - 14888799
Alignment:
Q  470 attaggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    |||||||| |||||| |||||||||||||  ||||||||||||||||||| ||||    
T  14888745 attaggctgcaaaagattttgatacgacttgttctccaaatcaagagaaaaaatg 14888799  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 523
Target Start/End: Complemental strand, 2456141 - 2456106
Alignment:
Q  488 ttgatacgactccttctccaaatcaagagaaacaat 523  Q
    |||||| |||||||||||||||||||||||||||||    
T  2456141 ttgatatgactccttctccaaatcaagagaaacaat 2456106  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 517
Target Start/End: Original strand, 2659297 - 2659332
Alignment:
Q  482 aagcttttgatacgactccttctccaaatcaagaga 517  Q
    |||||||||||||||||||||||| |||||||||||    
T  2659297 aagcttttgatacgactccttctctaaatcaagaga 2659332  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 523
Target Start/End: Original strand, 771649 - 771691
Alignment:
Q  481 aaagcttttgatacgactccttctccaaatcaagagaaacaat 523  Q
    |||| |||||||| ||||| |||||||||||||||||||||||    
T  771649 aaagattttgatatgactcattctccaaatcaagagaaacaat 771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 7942553 - 7942483
Alignment:
Q  326 catgtaaggaacacggtacaatttactccacggctcttcattatcatatcccttcataatccaaatatcca 396  Q
    |||||||||||||  |||||||||| |||| | ||||| |||| ||||  ||||||||||||||| |||||    
T  7942553 catgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatcca 7942483  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 519
Target Start/End: Complemental strand, 13526580 - 13526474
Alignment:
Q  413 tgcaaatatgcacaagcaatccatggattccctcaaggaccaactatctgtctccaaattaggcttcaaaagcttttgatacgactccttctccaaatca 512  Q
    |||||||||| ||||||||||| |  |  ||| ||| | ||||| || |||||| | |||||| | | |||||||||||||||| ||||| || ||||||    
T  13526580 tgcaaatatggacaagcaatccttcaacacccccaaagtccaacaatttgtctcaacattagggtgcgaaagcttttgatacgattccttttcaaaatca 13526481  T
Q  513 agagaaa 519  Q
    |||||||    
T  13526480 agagaaa 13526474  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 13526737 - 13526699
Alignment:
Q  220 aatacattagcacttggtcatcctccgtgatatataaag 258  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  13526737 aatacattagcacttggtcatcttccgtaatatataaag 13526699  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 9587031 - 9587063
Alignment:
Q  159 atattaaaagtaccacttttggaatcatagaca 191  Q
    ||||||||||||||| |||||||||||||||||    
T  9587031 atattaaaagtaccatttttggaatcatagaca 9587063  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 487 - 524
Target Start/End: Complemental strand, 33020217 - 33020180
Alignment:
Q  487 tttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33020217 tttgatacgactccttctccaaatcaagagaaacaatg 33020180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 524
Target Start/End: Complemental strand, 33026564 - 33026521
Alignment:
Q  481 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  33026564 aaagcgtttgatacaactccttctccaaatcaagagaaacaatg 33026521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 524
Target Start/End: Complemental strand, 33038061 - 33038018
Alignment:
Q  481 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  33038061 aaagcgtttgatacgattccttctccaaatcaagagaaacaatg 33038018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 523
Target Start/End: Original strand, 7160913 - 7160946
Alignment:
Q  490 gatacgactccttctccaaatcaagagaaacaat 523  Q
    |||| |||||||||||||||||||||||||||||    
T  7160913 gataagactccttctccaaatcaagagaaacaat 7160946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 523
Target Start/End: Complemental strand, 27755613 - 27755555
Alignment:
Q  465 tccaaattaggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaat 523  Q
    ||||||||||||  |  |||||||| |||| ||||||||||||||||||||||||||||    
T  27755613 tccaaattaggcagcgcaagcttttcatacaactccttctccaaatcaagagaaacaat 27755555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 523
Target Start/End: Complemental strand, 24723253 - 24723213
Alignment:
Q  483 agcttttgatacgactccttctccaaatcaagagaaacaat 523  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  24723253 agctcttgataagactccttctccaaatcaagagaaacaat 24723213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 474 - 523
Target Start/End: Original strand, 51221341 - 51221390
Alignment:
Q  474 ggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaat 523  Q
    |||| ||||||||||||||| || ||||||| ||||||||||||||||||    
T  51221341 ggctccaaaagcttttgataggattccttcttcaaatcaagagaaacaat 51221390  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 51381438 - 51381506
Alignment:
Q  326 catgtaaggaacacggtacaatttactccacggctcttcattatcatatcccttcataatccaaatatc 394  Q
    ||||||||||| || | |||||||| |||| | |||||||||  ||||| | |||||||||||||||||    
T  51381438 catgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatc 51381506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 524
Target Start/End: Complemental strand, 51858511 - 51858467
Alignment:
Q  480 aaaagcttttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    ||||||| |||| || |||| ||||||||||||||||||||||||    
T  51858511 aaaagctcttgacacaactcattctccaaatcaagagaaacaatg 51858467  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 89055 - 89013
Alignment:
Q  482 aagcttttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    |||||||| ||||||||| |||||||||||||| |||||||||    
T  89055 aagctttttatacgactcattctccaaatcaagtgaaacaatg 89013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 394
Target Start/End: Complemental strand, 89211 - 89143
Alignment:
Q  326 catgtaaggaacacggtacaatttactccacggctcttcattatcatatcccttcataatccaaatatc 394  Q
    |||||||||||||  |||||||||| |||| | ||||| |||  ||||| ||||||||| |||||||||    
T  89211 catgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatc 89143  T

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Target: scaffold1004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 524
Target Start/End: Complemental strand, 2055 - 2010
Alignment:
Q  479 caaaagcttttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    ||||||||||||||| ||||| |||  |||||||||||||||||||    
T  2055 caaaagcttttgatatgactctttcgtcaaatcaagagaaacaatg 2010  T

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Target: scaffold0760 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 524
Target Start/End: Complemental strand, 4550 - 4505
Alignment:
Q  479 caaaagcttttgatacgactccttctccaaatcaagagaaacaatg 524  Q
    ||||||||||||||| ||||| |||  |||||||||||||||||||    
T  4550 caaaagcttttgatatgactctttcgtcaaatcaagagaaacaatg 4505  T

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