View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15223_low_12 (Length: 211)
Name: NF15223_low_12
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15223_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 5919015 - 5919193
Alignment:
| Q |
15 |
caaaggaaaaggcaaagaagaatgattgtgttttaagagttcttgctgcaatgatatttggtactggttgtggagcattgacagcattcactgtgcttta |
114 |
Q |
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| T |
5919015 |
caaaggaaaaggcaaagaagaatgattgtgttttaagagttcttgctgcaatgatatttggcactggttgtggagcattgacagcattcactgtgcttta |
5919114 |
T |
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| Q |
115 |
tttgtggacaatctttggcaataaacgtggtgcagtggttccagaaggatgttctatgcagcctttagatgttgagtat |
193 |
Q |
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| T |
5919115 |
tttgtggacaatctttggcaataaacgtggtgcagttgttccagaaggatgttctatgcaacctttagatgttgagtat |
5919193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 3028521 - 3028349
Alignment:
| Q |
15 |
caaaggaaaaggcaaagaagaatgattgtgttttaagagttcttgctgcaatgatatttggtactggttgtggagcattgacagcattcactgtgcttta |
114 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |
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| T |
3028521 |
caaaggaaaaggcaaagaagaatggtggtgttttaagagttcttgctgcaatgatatttgatactggttgtggagcattgacagcatttattgtgcttta |
3028422 |
T |
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| Q |
115 |
tttgtggacaatctttggcaataaacgtggtgcagtggttccagaaggatgttctatgcagcctttagatgtt |
187 |
Q |
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| T |
3028421 |
tttgtggacaatatttgccaataaacgttgtgcagtggttccagaaggatgttctatgcaacttttacatgtt |
3028349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 24105137 - 24105242
Alignment:
| Q |
37 |
tgattgtgttttaagagttcttgctgcaatgatatttggtactggttgtggagcattgacagcattcactgtgctttatttgtggacaatctttggcaat |
136 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| | || ||||| ||||||||||||||||| || ||||| ||| |
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| T |
24105137 |
tgattgtgttttaagaattcttgctgcaatgatatttggttctggatgtggagcattggcggcgttcaccgtgctttatttgtggacgatgtttggtaat |
24105236 |
T |
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| Q |
137 |
aaacgt |
142 |
Q |
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| |||| |
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| T |
24105237 |
agacgt |
24105242 |
T |
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