View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15223_low_3 (Length: 400)
Name: NF15223_low_3
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15223_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 5520284 - 5519916
Alignment:
| Q |
17 |
cataggtttaaatatgcatttagtttctgcaaatatataattttctggttttgcgttcttatacgagtctacaactttttacttttgatcttctgtattt |
116 |
Q |
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| T |
5520284 |
cataggtttaaatatgcatttagtctctgcaaatatataattttctggttttgcgttcttatacgagtctacaactttttacttttgatcttctgtattt |
5520185 |
T |
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| Q |
117 |
tattttagtccctgcaaaatttgttcatattgaaatctctattaatttgtgtattatttactaaaatgacttgtattatataagaaactgatgaagtatt |
216 |
Q |
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| T |
5520184 |
tattttagtccctgcaaaatttgttcatattgaaatctctattaatttgtgtattatttactaaaatgacttgtattatataagaaactgatgaagtatt |
5520085 |
T |
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| Q |
217 |
atttctaaccatattaatactc---aattaaacaggagcatgtgacaatgaaggcaaatgcaaagtttgcaattccaaggaatagcctcaccaacacaaa |
313 |
Q |
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| T |
5520084 |
atttctaaccatattaatactcatgaattaaacagaaacatgtgacaatgaaggcaaatacaaagtttgcaattccaaggaatagcctcaccaacacaaa |
5519985 |
T |
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| Q |
314 |
cacaaagtgttcacaaaattgtgatgttgtgccaattaagggtagcccagagagatcaacaagatctat |
382 |
Q |
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| T |
5519984 |
cacaaagtgttcacaaaattgtgatgttgtgccaattaagggtagcccagagagatcaacaagatctat |
5519916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 5513378 - 5513342
Alignment:
| Q |
302 |
caccaacacaaacacaaagtgttcacaaaattgtgat |
338 |
Q |
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| T |
5513378 |
caccaacacaaacacaaagtgttcaaaagattgtgat |
5513342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 32311863 - 32311804
Alignment:
| Q |
92 |
tttttacttttgatcttctgtattttattttagtccctgcaaaatttgttcatattgaaat |
152 |
Q |
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| T |
32311863 |
tttttacttttgatcct-tgtaatttattttagtctttgcaaaatttattcatattaaaat |
32311804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 10140886 - 10140842
Alignment:
| Q |
112 |
tattttattttagtccctgcaaaatttgttcatattgaaatctct |
156 |
Q |
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| T |
10140886 |
tattttattttagttcctacaaaatatgttcatattgaagtctct |
10140842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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