View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15223_low_6 (Length: 327)
Name: NF15223_low_6
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15223_low_6 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 47 - 269
Target Start/End: Original strand, 12100769 - 12100991
Alignment:
| Q |
47 |
aaaacacaattgatgacagatcattctcaattccatgcattaaaggagacgctttgatcatccctattgggcaggaggagtataaccgtggtgtagagga |
146 |
Q |
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| T |
12100769 |
aaaacacaatctatgacagaccactcccaactccttgcattaaaggcgacgctttgagtatccgtattgggtaggaggagtataaccgtggtgtagagga |
12100868 |
T |
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| Q |
147 |
atgcaagaatgcatcacgggctagattgacagtataaaagggtgagaaaccgtactctgcacgtgacctaagcaccaaattgggaaagctttggaaaaca |
246 |
Q |
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| T |
12100869 |
attcaagaatacgttacgggctagattgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagctttggaaaaca |
12100968 |
T |
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| Q |
247 |
atggtggcgtggaaaatggttcc |
269 |
Q |
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| T |
12100969 |
atggcagcatggaaaatggttcc |
12100991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 82 - 269
Target Start/End: Complemental strand, 11781390 - 11781203
Alignment:
| Q |
82 |
tgcattaaaggagacgctttgatcatccctattgggcaggaggagtataaccgtggtgtagaggaatgcaagaatgcatcacgggctagattgacagtat |
181 |
Q |
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| T |
11781390 |
tgcattaagggggacgctttgagcatccgcattgggcaggaggagtatcaccgtggtgtagatgaatgcaagagtgcattacgggctaaattggctctaa |
11781291 |
T |
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| Q |
182 |
aaaagggtgagaaaccgtactctgcacgtgacctaagcaccaaattgggaaagctttggaaaacaatggtggcgtggaaaatggttcc |
269 |
Q |
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| T |
11781290 |
acaagggtgagaaaccgtactctgcatgtgacctaagcaccaaattgggaaagctttggaaaacaatggcggcatggaaaatggttcc |
11781203 |
T |
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Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 148511 - 148421
Alignment:
| Q |
136 |
ggtgtagaggaatgcaagaatgcatcacgggctagattgacagtataaaagggtgagaaaccgtactctgcacgtgacctaagcaccaaat |
226 |
Q |
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| T |
148511 |
ggtgtagaggaatgcaagaatgcgttacgggctagattgactctaaacaagggtgataaaccttattcggcacgtgacttgagtaccaaat |
148421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 246
Target Start/End: Complemental strand, 33042547 - 33042441
Alignment:
| Q |
139 |
gtagaggaatgcaagaatgcatcacgggctagattgacagtataaaagggtgagaaaccgtactctgcacgtgacctaagcaccaaattgggaaagcttt |
238 |
Q |
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| T |
33042547 |
gtagaggaatgcaagaatgcgttaagggctcgattgactcttaacaaggg-gataagccgtattctgcacgtgacctaaataccaaaatcggaaagcttt |
33042449 |
T |
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| Q |
239 |
ggaaaaca |
246 |
Q |
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| T |
33042448 |
ggaaaaca |
33042441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 266
Target Start/End: Original strand, 17458357 - 17458545
Alignment:
| Q |
78 |
tccatgcattaaaggagacgctttgatcatccctattgggcaggaggagtataaccgtggtgtagaggaatgcaagaatgcatcacgggctagattgaca |
177 |
Q |
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| T |
17458357 |
tccatgcttcaaaggagatgctttgagcatccaaatcggtcaggacgagtatattaggggtgtaaaggaatgcaagaattcgttacgggatcaattaact |
17458456 |
T |
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| Q |
178 |
gtataaaagggtgagaaaccgtactctgcacgtgacctaagcaccaaattgggaaagctttggaaaacaatggtggcgtggaaaatggt |
266 |
Q |
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| T |
17458457 |
cttaacaagggggataagccgtattctgcacgagacctaagtaccaaaataggaaagctttgggaaacattggcgggctggaaaatggt |
17458545 |
T |
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