View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15223_low_7 (Length: 302)
Name: NF15223_low_7
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15223_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 10883197 - 10883482
Alignment:
| Q |
1 |
gttgcttcagatgatggaccacaaacacaattagtgtttcctgaagtaaccatcatgcaactctatggcctgtttaatgttaagcgtttctataaggggg |
100 |
Q |
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| T |
10883197 |
gttgcttcagatgatggaccacaaacacaattagtgtttcctgaagtaaccttcatgcaactctatggcctgtttaatgttaagcgtttctataaggggg |
10883296 |
T |
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| Q |
101 |
gacatatagaatgtccaaaattgaagcagttggtcgtgaacttctgtagtaaattggacgtgttcacaacagaaaccacaaatgaagaaagacaaggcgt |
200 |
Q |
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| T |
10883297 |
gacatatagaatgtccaaaattgaagcagttggtcgtgaacttttgtcgtaaattggacgtgttcacaacagaaaccacaaatgaagaaagacaaggcgt |
10883396 |
T |
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| Q |
201 |
tttcttagctgaaaaggtaaggaaccattaacnnnnnnnnaatggcagtaaccattaactgctatctcattgttccaactcataag |
286 |
Q |
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| T |
10883397 |
tttcttagctgaaaaggtaaggaaccattaacttttttttaatggcagtaaccattaactgctatctcattgttccaactcataag |
10883482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10851885 - 10852116
Alignment:
| Q |
1 |
gttgcttcagatgatggaccacaaacacaattagtgtttcctgaagtaaccatcatgcaactctatggcctgtttaatgttaagcgtttctataaggggg |
100 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| |||| ||||||||| || ||||||||||||||||||| || |
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| T |
10851885 |
gttgcttgggatgatggaccacaaacacgattagtgtttcctgaagtaaccttcatgaaactttatggcctgccaaaagttaagcgtttctataaggagg |
10851984 |
T |
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| Q |
101 |
gacatatagaatgtccaaaattgaagcagttggtcgtgaacttctgtagtaaattggacgtgttcacaacagaaaccacaaatgaagaaagacaaggcgt |
200 |
Q |
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| T |
10851985 |
gacatatagaatgtccaaaactgaagcagttggctgtggacttttgtgagaagctggacatgttcacagcagaaaccacaaatgaagaaagacaagcagt |
10852084 |
T |
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| Q |
201 |
tttcttagctgaaaaggtaaggaaccattaac |
232 |
Q |
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| T |
10852085 |
tttcttagctgaaaaggtaaggaactattaac |
10852116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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