View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15223_low_8 (Length: 298)
Name: NF15223_low_8
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15223_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 102 - 279
Target Start/End: Complemental strand, 51154031 - 51153851
Alignment:
| Q |
102 |
tgttaaagagggaaaggattcttgtactcgtcatttatgttaatataatgggttttacctttttgtactcgtcatannnnnnnnnn---ggttcctgtaa |
198 |
Q |
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| T |
51154031 |
tgttaaagagggaaaagattcttgtactcgtcatttatgttaatataaggggttttacctttttgtactcgtcatatattattttttttggttcctgtaa |
51153932 |
T |
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| Q |
199 |
tcatcatttctgttaatatatataattttccatttaaagagaacaaataatcaatatctcctttaagccacaccaccattt |
279 |
Q |
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| T |
51153931 |
tcatcatttctgttaatatatataattttccatttaaagagaacaaataatcaatatctcctttaagccacaacaccattt |
51153851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 51154121 - 51154059
Alignment:
| Q |
1 |
ttttttataatggttttattctagatggaaaaaatggcaaatgatcatttcttctatctacgg |
63 |
Q |
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| T |
51154121 |
ttttttataatggttttattctagatggaaaaaatggcaaatgatcatttcttctatctacgg |
51154059 |
T |
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