View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15223_low_9 (Length: 255)
Name: NF15223_low_9
Description: NF15223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15223_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 48705311 - 48705523
Alignment:
| Q |
18 |
gggcaattagtaagaattaccgtgtgcagctgcagcgacaacgtccctatgagaatcccttacgatgagttgaattctggttttgtaatgagaatgagag |
117 |
Q |
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| T |
48705311 |
gggcaattagtaagaattaccgtgtgcagctgcagcgacgacgtccctatgagaatcccttacgatgagttgaattctggttttgtaatgagaatgagag |
48705410 |
T |
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| Q |
118 |
agatagaaatctgagagtgacatgtttatgcagctcaatcctatcttcccaaccgtttcattactgctaatatcaattacagctcccactttcactacaa |
217 |
Q |
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| T |
48705411 |
agatagaaatctgagagtgacatgtttatgcagctcaatcctatcttcccaaccgtttcattactgctaatatcaattacagctcccactttcactacaa |
48705510 |
T |
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| Q |
218 |
tattactttcatt |
230 |
Q |
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||||||||||||| |
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| T |
48705511 |
tattactttcatt |
48705523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 48715303 - 48715527
Alignment:
| Q |
20 |
gcaattagtaagaattaccgtgtgcagctgcagcgacaacgtccctatgagaatcccttacgatgagttgaattctggttttgtaatgagaatgagagag |
119 |
Q |
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| T |
48715303 |
gcaattagtaataattaccgtgtgcagcggcagagacgacgtccttatgggaatccctaaggatgagttgaattctggttttgtaatgagaatgagaaag |
48715402 |
T |
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| Q |
120 |
atagaaatctgagagtgacatgtttatgcagctcaatcctatcttcccaaccgtttcattactgctaatatcaattacagctcccactttcactacaata |
219 |
Q |
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| T |
48715403 |
atagaaatctgaaagagacatgtttatgcagctcaatcctattttcccaaccgttccattactgctaacatcaattacagctcccactttcactacaata |
48715502 |
T |
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| Q |
220 |
ttactttcatttttagtaatttgtg |
244 |
Q |
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| T |
48715503 |
ttactctcatttttagtaatttgtg |
48715527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 51164776 - 51164832
Alignment:
| Q |
142 |
tttatgcagctcaatcctatcttcccaaccgtttcattactgctaatatcaattaca |
198 |
Q |
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| T |
51164776 |
tttatgcagctcaatcctattttcctaactgttccattactgccaacatcaattaca |
51164832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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