View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15224_high_3 (Length: 449)

Name: NF15224_high_3
Description: NF15224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15224_high_3
NF15224_high_3
[»] chr3 (1 HSPs)
chr3 (21-434)||(1282888-1283300)
[»] scaffold0199 (1 HSPs)
scaffold0199 (229-419)||(1228-1418)
[»] chr8 (2 HSPs)
chr8 (229-419)||(1675991-1676181)
chr8 (331-434)||(20862380-20862483)
[»] scaffold0288 (1 HSPs)
scaffold0288 (218-434)||(1908-2124)
[»] chr6 (28 HSPs)
chr6 (218-434)||(4618756-4618972)
chr6 (229-434)||(4603565-4603773)
chr6 (221-434)||(4594465-4594683)
chr6 (229-434)||(4565484-4565689)
chr6 (320-434)||(4507366-4507480)
chr6 (322-434)||(4513540-4513652)
chr6 (317-434)||(3173458-3173575)
chr6 (331-431)||(4558583-4558683)
chr6 (320-434)||(4462662-4462776)
chr6 (320-434)||(4471369-4471483)
chr6 (317-434)||(4482320-4482437)
chr6 (335-434)||(4258750-4258849)
chr6 (330-429)||(4612287-4612386)
chr6 (335-434)||(4627605-4627704)
chr6 (335-434)||(4623762-4623861)
chr6 (331-431)||(4572424-4572524)
chr6 (335-434)||(4517795-4517894)
chr6 (335-421)||(4255395-4255481)
chr6 (320-434)||(4265616-4265730)
chr6 (352-434)||(4569525-4569607)
chr6 (330-434)||(4587087-4587191)
chr6 (335-434)||(4575910-4576009)
chr6 (353-434)||(4488789-4488870)
chr6 (335-434)||(4581469-4581568)
chr6 (366-415)||(4497850-4497899)
chr6 (331-432)||(4599620-4599721)
chr6 (331-379)||(4493415-4493463)
chr6 (320-379)||(4472616-4472675)
[»] scaffold0475 (1 HSPs)
scaffold0475 (320-434)||(2279-2393)
[»] chr7 (1 HSPs)
chr7 (335-434)||(3088200-3088299)
[»] chr5 (1 HSPs)
chr5 (338-432)||(24104552-24104646)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 434
Target Start/End: Complemental strand, 1283300 - 1282888
Alignment:
Q  21 acatgtaattacattcaattaattcannnnnnnnncttcaaattattacttgtatggagatgtcaatgtcgtcatccatgttcttatttgcatgtccatg 120  Q
    ||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||| |||||||||| |||||||  |||||||||    
T  1283300 acatgtaattacattcaattaattcattttttttt-ttcaaattattacttgtatggagatgtcaatgtcatcatccatgtccttatttatatgtccatg 1283202  T
Q  121 cttcatatcattgtaaagatcaccaaattaataattgagttacgtgaacgtatttccnnnnnnnagaacctcctagatttgatctgtttggaccacttcc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||| ||| |||||    
T  1283201 cttcatatcattgtaaagatcaccaaattaataattgagttacgtgaacgtatttcctttttttagaacctcctagattttatctgtttgaacctcttcc 1283102  T
Q  221 ttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaact 320  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  1283101 ttttttgttctctattaaagcacatgcttatcacttgtttctcaacctcatatcttgcacgcataacatccaagtagagaattatcaaaaatggtcaact 1283002  T
Q  321 ttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggctt 420  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1283001 ttgcaaacacaaaaccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggctt 1282902  T
Q  421 ttacataacctttg 434  Q
    ||||||||||||||    
T  1282901 ttacataacctttg 1282888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 229 - 419
Target Start/End: Complemental strand, 1418 - 1228
Alignment:
Q  229 tctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgcaaac 328  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  1418 tctctattaaagcacatgcttatcacttgtttctcaacctcatatcttgcacacataacatccaaatagataattatcaaaaatgggaaactttgcaaac 1319  T
Q  329 acaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 419  Q
    | |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  1318 agaaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggct 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 229 - 419
Target Start/End: Complemental strand, 1676181 - 1675991
Alignment:
Q  229 tctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgcaaac 328  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  1676181 tctctattaaagcacatgcttatcacttgtttctcaacctcatatcttgcacacataacatccaaatagataattatcaaaaatgggaaactttgcaaac 1676082  T
Q  329 acaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 419  Q
    | |||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  1676081 agaaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggct 1675991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 331 - 434
Target Start/End: Original strand, 20862380 - 20862483
Alignment:
Q  331 aaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc 430  Q
    |||||||||||| ||| | | ||||||||||  |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||     
T  20862380 aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca 20862479  T
Q  431 tttg 434  Q
    ||||    
T  20862480 tttg 20862483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 218 - 434
Target Start/End: Original strand, 1908 - 2124
Alignment:
Q  218 tccttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaa 317  Q
    ||||||||| |  |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||  | ||||||||||||||||| ||    
T  1908 tccttttttttcttctattaaagcacatgcttatcacttgtttctcaacctcataacttgcaaacataacatcaaaagatagaattatcaaaaatgggaa 2007  T
Q  318 actttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagagg 417  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  2008 actttgcaaacagaaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagagg 2107  T
Q  418 cttttacataacctttg 434  Q
    |||| ||||||||||||    
T  2108 ctttcacataacctttg 2124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 218 - 434
Target Start/End: Complemental strand, 4618972 - 4618756
Alignment:
Q  218 tccttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaa 317  Q
    ||||||||| |  |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||  | ||||||||||||||||| ||    
T  4618972 tccttttttttcttctattaaagcacatgcttatcacttgtttctcaacctcataacttgcaaacataacatcaaaagatagaattatcaaaaatgggaa 4618873  T
Q  318 actttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagagg 417  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  4618872 actttgcaaacagaaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagagg 4618773  T
Q  418 cttttacataacctttg 434  Q
    |||| ||||||||||||    
T  4618772 ctttcacataacctttg 4618756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 229 - 434
Target Start/End: Complemental strand, 4603773 - 4603565
Alignment:
Q  229 tctctattaaagcacatgcttat---cacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgca 325  Q
    |||||||||| ||||||||||||   ||||| ||  |||||||||||| |||||||||||| |||||| |||| ||||| | ||||||| ||||||||||    
T  4603773 tctctattaatgcacatgcttattatcacttgttcttcaacctcatattttgcacacataatatccaaatagaaaattaactaaaatgggaaactttgca 4603674  T
Q  326 aacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttaca 425  Q
    |||| ||||| |||||||||| ||||||||||||||  ||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||| |||    
T  4603673 aacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcaca 4603574  T
Q  426 taacctttg 434  Q
    |||||||||    
T  4603573 taacctttg 4603565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 221 - 434
Target Start/End: Complemental strand, 4594683 - 4594465
Alignment:
Q  221 ttttttgttctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataaca------tccaagtagagaattatcaaaaatgg 314  Q
    |||||| |||||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||      | ||| ||||||||||||||| ||||    
T  4594683 tttttttttctctattaaagcccatgtttatcacttgtttctcaacctcgtatcttgcacacataacaataacattcaa-tagagaattatcaaagatgg 4594585  T
Q  315 taaactttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttag 414  Q
     |||||||||||||| |||||||||||||||| ||||||||  ||||  |||||| ||||| ||||||||||||||||| |||||||| |||||||||||    
T  4594584 gaaactttgcaaacagaaaaccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttag 4594485  T
Q  415 aggcttttacataacctttg 434  Q
    ||| ||| ||||||||||||    
T  4594484 aggatttcacataacctttg 4594465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 434
Target Start/End: Complemental strand, 4565689 - 4565484
Alignment:
Q  229 tctctattaaagcacatgcttatcacttctttctcaacctcatatcttgcacacataacatccaagtagagaattatcaaaaatggtaaactttgcaaac 328  Q
    ||||||| ||||||||||| |||||||| ||| |||||||||||||||||||| ||||||| |||  ||| || | ||||| |||| ||  |||||||||    
T  4565689 tctctataaaagcacatgcctatcacttgtttttcaacctcatatcttgcacaaataacatacaaacagaaaaatttcaaagatgggaagttttgcaaac 4565590  T
Q  329 acaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataa 428  Q
    | |||||||||||||||| ||||||||  ||||  |||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| ||| | ||||    
T  4565589 agaaaaccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataa 4565490  T
Q  429 cctttg 434  Q
    ||||||    
T  4565489 cctttg 4565484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 320 - 434
Target Start/End: Complemental strand, 4507480 - 4507366
Alignment:
Q  320 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 419  Q
    |||||||| | |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || || ||||||||| ||||||    
T  4507480 tttgcaaagagaaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggct 4507381  T
Q  420 tttacataacctttg 434  Q
    || ||||||||||||    
T  4507380 ttcacataacctttg 4507366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 322 - 434
Target Start/End: Original strand, 4513540 - 4513652
Alignment:
Q  322 tgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttt 421  Q
    ||||| || |||||||||||||||| ||||||||||||||  ||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  4513540 tgcaagcagaaaaccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggcttt 4513639  T
Q  422 tacataacctttg 434  Q
     ||||||||||||    
T  4513640 cacataacctttg 4513652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 317 - 434
Target Start/End: Complemental strand, 3173575 - 3173458
Alignment:
Q  317 aactttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagag 416  Q
    ||||||||||| | |||||||||||| ||| | | ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  3173575 aactttgcaaagagaaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagag 3173476  T
Q  417 gcttttacataacctttg 434  Q
    ||||| ||||||||||||    
T  3173475 gctttcacataacctttg 3173458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 331 - 431
Target Start/End: Complemental strand, 4558683 - 4558583
Alignment:
Q  331 aaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc 430  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||||||||    
T  4558683 aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcacataacc 4558584  T
Q  431 t 431  Q
    |    
T  4558583 t 4558583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 320 - 434
Target Start/End: Complemental strand, 4462776 - 4462662
Alignment:
Q  320 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 419  Q
    |||||||| ||||| |||||||||||| ||||||||| |||| | ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |    
T  4462776 tttgcaaagacaaagccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggtt 4462677  T
Q  420 tttacataacctttg 434  Q
    || ||||||||||||    
T  4462676 ttcacataacctttg 4462662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 320 - 434
Target Start/End: Complemental strand, 4471483 - 4471369
Alignment:
Q  320 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 419  Q
    |||||||| ||||| |||||||||||  ||||||||| |||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||    
T  4471483 tttgcaaagacaaagccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggct 4471384  T
Q  420 tttacataacctttg 434  Q
    || ||||||| ||||    
T  4471383 ttcacataacgtttg 4471369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 317 - 434
Target Start/End: Complemental strand, 4482437 - 4482320
Alignment:
Q  317 aactttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagag 416  Q
    ||||||||| | | |||||||||||| ||| ||| ||||| |||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||    
T  4482437 aactttgcagaaaaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagag 4482338  T
Q  417 gcttttacataacctttg 434  Q
    ||||| ||||||||||||    
T  4482337 gctttcacataacctttg 4482320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 335 - 434
Target Start/End: Original strand, 4258750 - 4258849
Alignment:
Q  335 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 434  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||| ||| ||| ||||||||||||    
T  4258750 ccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacataacctttg 4258849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 330 - 429
Target Start/End: Original strand, 4612287 - 4612386
Alignment:
Q  330 caaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataac 429  Q
    ||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||    
T  4612287 caaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataac 4612386  T

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Target: chr6; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 4627704 - 4627605
Alignment:
Q  335 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 434  Q
    |||||||||||| ||||||||| ||||  |||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||||    
T  4627704 ccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttg 4627605  T

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Target: chr6; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 4623861 - 4623762
Alignment:
Q  335 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 434  Q
    |||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||| || ||| |||||| ||||||| ||||||||||||    
T  4623861 ccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacataacctttg 4623762  T

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Target: chr6; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 331 - 431
Target Start/End: Complemental strand, 4572524 - 4572424
Alignment:
Q  331 aaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc 430  Q
    |||||||||||||||| | || |||||||||| ||||||||||||||||||||||||  ||||||||||| | |||||||||||||| ||| ||||||||    
T  4572524 aaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcacataacc 4572425  T
Q  431 t 431  Q
    |    
T  4572424 t 4572424  T

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Target: chr6; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 4517894 - 4517795
Alignment:
Q  335 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 434  Q
    |||||||| ||||| | ||||||||||  |||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||| ||||||||||||    
T  4517894 ccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttg 4517795  T

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Target: chr6; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 335 - 421
Target Start/End: Original strand, 4255395 - 4255481
Alignment:
Q  335 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttt 421  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |||| |||||||    
T  4255395 ccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaaggcttt 4255481  T

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Target: chr6; HSP #19
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 320 - 434
Target Start/End: Original strand, 4265616 - 4265730
Alignment:
Q  320 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 419  Q
    ||||||||  |||| |||||||||||| ||||||||  ||||  |||||||||||||||| |||||||||| |||| ||| || ||||||||||||||||    
T  4265616 tttgcaaagccaaagccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggct 4265715  T
Q  420 tttacataacctttg 434  Q
    || ||||||||||||    
T  4265716 ttcacataacctttg 4265730  T

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Target: chr6; HSP #20
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 4569607 - 4569525
Alignment:
Q  352 tccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 434  Q
    ||||||||||  ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||||||||    
T  4569607 tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttg 4569525  T

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Target: chr6; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 330 - 434
Target Start/End: Complemental strand, 4587191 - 4587087
Alignment:
Q  330 caaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataac 429  Q
    ||||||| ||||||||| | || |||| ||||| |||||||||||||||||||||||| |||||||| ||||| ||||||||| |||| ||| |||||||    
T  4587191 caaaacctcatgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataac 4587092  T
Q  430 ctttg 434  Q
    |||||    
T  4587091 ctttg 4587087  T

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Target: chr6; HSP #22
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 4576009 - 4575910
Alignment:
Q  335 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 434  Q
    |||||||| ||| | | ||||| ||||| |||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||    
T  4576009 ccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataacctttg 4575910  T

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Target: chr6; HSP #23
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 353 - 434
Target Start/End: Original strand, 4488789 - 4488870
Alignment:
Q  353 ccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 434  Q
    |||| ||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  4488789 ccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttg 4488870  T

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Target: chr6; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 4581568 - 4581469
Alignment:
Q  335 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 434  Q
    |||||||| ||| ||||||||||||||  |||||| ||||||| ||||||  | | ||||||||| || |||||||||||||||||| ||||||||||||    
T  4581568 ccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttg 4581469  T

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Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 415
Target Start/End: Original strand, 4497850 - 4497899
Alignment:
Q  366 aaggccatatcaatccattgttcaaactagcaaaactacttcaccttaga 415  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  4497850 aaggccatatcaatccattgttgaaactaggaaaattacttcaccttaga 4497899  T

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Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 432
Target Start/End: Complemental strand, 4599721 - 4599620
Alignment:
Q  331 aaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc 430  Q
    ||||| |||||| ||  |||||||||  |||  ||||||  ||||||||| |||  |||||||||||||  | |||||||||||||| ||||||||||||    
T  4599721 aaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttagaggattttacataacc 4599622  T
Q  431 tt 432  Q
    ||    
T  4599621 tt 4599620  T

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Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 379
Target Start/End: Complemental strand, 4493463 - 4493415
Alignment:
Q  331 aaaaccacatgctgtgatgattccatatccagctcaaggccatatcaat 379  Q
    |||||||||||| ||| ||||||||| |||||||||||| |||||||||    
T  4493463 aaaaccacatgcagtgttgattccatttccagctcaaggtcatatcaat 4493415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 4472675 - 4472616
Alignment:
Q  320 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaat 379  Q
    |||||||  |||||||||||||| ||| ||||||||| |||| | |||||||||||||||    
T  4472675 tttgcaatgacaaaaccacatgcagtgttgattccatgtccaccccaaggccatatcaat 4472616  T

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Target: scaffold0475 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 320 - 434
Target Start/End: Complemental strand, 2393 - 2279
Alignment:
Q  320 tttgcaaacacaaaaccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggct 419  Q
    |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  2393 tttgcaaacaaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggct 2294  T
Q  420 tttacataacctttg 434  Q
    || ||||||||||||    
T  2293 ttcacataacctttg 2279  T

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Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 335 - 434
Target Start/End: Complemental strand, 3088299 - 3088200
Alignment:
Q  335 ccacatgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg 434  Q
    |||||||||||| ||||||||||||||  |||||| ||||| ||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||    
T  3088299 ccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcacataacctttg 3088200  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 24104646 - 24104552
Alignment:
Q  338 catgctgtgatgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctt 432  Q
    ||||||||| ||||||||  ||||  |||||| ||||||||| ||||||||||||||| ||| || |||||||||||||||||| ||||||||||    
T  24104646 catgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataacctt 24104552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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