View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15224_high_8 (Length: 305)
Name: NF15224_high_8
Description: NF15224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15224_high_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 6685307 - 6685611
Alignment:
| Q |
1 |
atgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgctaccttggtattcagtttaaaaatatagagtgagtattcaatttagctac |
100 |
Q |
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| T |
6685307 |
atgatccttctcaactttgatttttttggccttgtgttcttttgacttgctaccttggtattcagtttaaaaatatagagtgagtattcaatttagctac |
6685406 |
T |
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| Q |
101 |
ccaaacaaatggaactttgctacccagtcattctacacttctacataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaat |
200 |
Q |
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| T |
6685407 |
ccaaacaaatggaactttgctacccagtcattctacacttttacataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaat |
6685506 |
T |
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| Q |
201 |
aaacgagtaccggttaatttctttggtatatactgatcaacaacaacttcatgtttgaggattggaggtaaccctctgccatccataatagaaccaactc |
300 |
Q |
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| T |
6685507 |
aaacgagtaccggttaatttctttggtatatactaatcaacaacaacttcatgtttgaggattggaggtaaccctctgccatccataatagaatcaactc |
6685606 |
T |
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| Q |
301 |
gttct |
305 |
Q |
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||||| |
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| T |
6685607 |
gttct |
6685611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 18768007 - 18768110
Alignment:
| Q |
138 |
cttctacataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggtatatactgat |
237 |
Q |
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| T |
18768007 |
cttctacataatcaaactaaattattttctgcataatcaaacaaccaaatatttaaaaagtataaacgagtaccggttaatttcttttgtatatactgat |
18768106 |
T |
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| Q |
238 |
caac |
241 |
Q |
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|||| |
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| T |
18768107 |
caac |
18768110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 15515153 - 15515284
Alignment:
| Q |
1 |
atgatccttctcaactttgannnnnnnggccttgtgttcttttgacttgctaccttggtattcagtttaaaaatatagagtgagtattcaatttagctac |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| |||||||||| |
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| T |
15515153 |
atgatccttctcaactttgaattttttggccttgtgttcttttggcttggtaccttggtatttagtttaaaaatataaagtgagtatttgatttagctac |
15515252 |
T |
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| Q |
101 |
ccaaa-caaatggaactttgctacccagtcat |
131 |
Q |
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| T |
15515253 |
ccaaatcaaatggaactttgcttcctagtcat |
15515284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 13850544 - 13850639
Alignment:
| Q |
145 |
ataatcaaactaaattattttctacataatcaaacaacaaaacatttaaaaagaataaacgagtaccggttaatttctttggtatatactgatcaac |
241 |
Q |
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||||||||||||||||||||| | |||||| ||||||| || |||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
13850544 |
ataatcaaactaaattatttt-tgcataattaaacaacctaatatttaaaaagtataaacgagtaccagttaatttcttttgtatatactgatcaac |
13850639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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