View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15224_low_1 (Length: 564)
Name: NF15224_low_1
Description: NF15224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15224_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 19 - 551
Target Start/End: Complemental strand, 40222623 - 40222090
Alignment:
| Q |
19 |
cccgcagcaaagtggctagcccttattcatcaagctctaaacacctcaaacaatgaaatcccaaatcaaaagcaacgctttagtctagtagcaagcaagc |
118 |
Q |
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| T |
40222623 |
cccgcagcaaagtggctagcccttattcatcaagctctaaacacctcaaacaatgaaatcccaaatcaaaagaaacgctttagcctagtagcaagcaagc |
40222524 |
T |
|
| Q |
119 |
aaatggttggtatcttcttgtgcgtgtgggtacgcgccgattatcgcaaccacgttggcaatttaaaagtgtctcgcgttggtaccggcatcatgggcta |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40222523 |
aaatggtcggtatcttcttgtgcgtgtgggtacgcgccgattatcgcaaccacgttggcaatttaaaagtgtctcgcgttggtaccggcatcatgggcta |
40222424 |
T |
|
| Q |
219 |
ccttggaaataaggttcgttaaaagtcaaatgatctgacgattatgattgattgatagtataaaataaattacacgttgatgtcatatatgtggttcaat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40222423 |
ccttggaaataaggttcgttaaaagtcaaatgatctgacgattatgattgattgatagtataaaagaaattacacgttgatgtcatatatgtggttcaat |
40222324 |
T |
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| Q |
319 |
atgcgcatgtccagtacaattatatatgag-ggggctataaaatggttctaattaagtagctgttgcttcagattttgctatggaaatgtgagatttcaa |
417 |
Q |
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|||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
40222323 |
atgcgcgtgttatgtacaattatatatgaggggggctataaaatggttctaattaattagctattgcttcagattttgctatggaaatgtgacatttcaa |
40222224 |
T |
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| Q |
418 |
gatgaagtaggactatgtactggatacagtggtatgattatgattcattgcttacatttttataaatttgtgttttatgctaacagggttcgatatctat |
517 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
40222223 |
gatgaagtaggactatgtactggctacagtggtatgattatgattcattgcttacatttttgtaaatttgtggtttatgctaacagggttcgatatctat |
40222124 |
T |
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| Q |
518 |
tatcatgagattgtaccataccacattctgcttc |
551 |
Q |
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|| ||||||||||||||| ||||||||||||||| |
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| T |
40222123 |
tagcatgagattgtaccaaaccacattctgcttc |
40222090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 39338380 - 39338417
Alignment:
| Q |
247 |
aatgatctgacgattatgattgattgatagtataaaat |
284 |
Q |
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|||||| |||||||||| |||||||||||||||||||| |
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| T |
39338380 |
aatgatttgacgattataattgattgatagtataaaat |
39338417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 4076069 - 4076111
Alignment:
| Q |
247 |
aatgatctgacgattatgattgattgatagtataaaataaatt |
289 |
Q |
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|||||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
4076069 |
aatgatctaacgattatgattgattgatagtgtaaaaaaaatt |
4076111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 36886051 - 36886013
Alignment:
| Q |
247 |
aatgatctgacgattatgattgattgatagtataaaata |
285 |
Q |
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||||| ||||||||||||||||||||||||| ||||||| |
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| T |
36886051 |
aatgacctgacgattatgattgattgatagtgtaaaata |
36886013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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