View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15224_low_2 (Length: 497)
Name: NF15224_low_2
Description: NF15224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15224_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 12 - 484
Target Start/End: Complemental strand, 37445579 - 37445107
Alignment:
| Q |
12 |
catcatcgggttttttaaggtatatattactgtactaactattacttctagtatataatatttgacttgtataatagtcaaattaattaagtatttctaa |
111 |
Q |
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| T |
37445579 |
catcattgggttttttaaggtatatattactgtactaactattactactagtatataatatttgacttgtataatagtcaaattaattaagtgtttctaa |
37445480 |
T |
|
| Q |
112 |
aaaccccacaatattcgaggttttttattatataataaaatatttgtctcatattacatgctgcgcatgcagattgaggctaaatatcctgcggatttgg |
211 |
Q |
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| T |
37445479 |
aaatcccaaaatattcgaggttttttattatataataaaatatttgtctcatattacatgctgcgcatgcagattgaggctaaatatcctgcggatttgg |
37445380 |
T |
|
| Q |
212 |
tagctaagttttattatgctaaacgaaaattggtgtgggagatattgcgtgatggtttaaaggaaaagattgaaatacattggcaaaacatttcagccat |
311 |
Q |
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| T |
37445379 |
tagctaagttttattatgctaaacgaaaattggtgtgggagatattgcgtgatggtttaaaggaaaagattgaaatacattggcaaaacatttcagccat |
37445280 |
T |
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| Q |
312 |
tcgagctgttcttgaggataatttacctggtattcttgaaattgaggtacttctttctttaataaatagtcnnnnnnnacactgtgataagctatgcaga |
411 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37445279 |
tcgagctgttcttgaggataatttacccggtattcttgaaattgaggtacttctttctttaataaatagtctttttttacactgtgataagctatgcaga |
37445180 |
T |
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| Q |
412 |
cacattcacattaagaaaactatgtatagatgttaattttcattggatttgttttttacagctagacaaagtt |
484 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37445179 |
cacattcacatcaagaaaactatgtatagatgttaattttcattggatttgttttttacagctagacaaagtt |
37445107 |
T |
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