View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15224_low_5 (Length: 396)
Name: NF15224_low_5
Description: NF15224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15224_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 38176251 - 38176621
Alignment:
| Q |
13 |
aatatcttaatggttcaattgataaaaagaaaaggatggaatcatttactttttcattgtatgtaaacgtttgttaaaaattctgttcaannnnnnnnat |
112 |
Q |
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| T |
38176251 |
aatatcttaatggttcaattgataaaaagaaaaggatggaatcatttactttttcattgtatgtaaacgtttgttaaaaattctgttcaattttttttat |
38176350 |
T |
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| Q |
113 |
gcaccttagaccttagtggcaaaaaagattttaaacctgacttcatgcaaactataggacctcctaaccacgaaccaaatcttagcggcttatcaaaact |
212 |
Q |
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| T |
38176351 |
gtaccttagaccttagtggcaaaaaagatttttaacctgacttcatgcaaactataggacctcctaaccacgaaccaaatcttagcggcttatcaaaact |
38176450 |
T |
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| Q |
213 |
ttaagttggcaaattcttctttaatttt-cagatgatagttttgtttgttattgtttacaggatctgaagtcaaagactatatttgatcctggtatggag |
311 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38176451 |
ttaagttgacaaattcttctttaattttacagatgatagttttgtttgttattgtttacaggatctgaagtcaaatactatatttgatcctggtatggag |
38176550 |
T |
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| Q |
312 |
attaatttaaagaacta--aaatatatatattccaatcaaatgagaatggcaaaagtatgaattcatattt |
380 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38176551 |
attaatttaaagaactaacatatatatatattccaatcaaatgagaatggcaaaagtatgaattcatattt |
38176621 |
T |
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