View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15224_low_6 (Length: 395)
Name: NF15224_low_6
Description: NF15224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15224_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 34674696 - 34675080
Alignment:
| Q |
1 |
tttaattcaatgtggatgatcccccatgcttccctctatgacccaacaatggtattaaagtcgatgattccacgaatgatgttcaagtgacgtgttcggt |
100 |
Q |
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| T |
34674696 |
tttaattcaatgtggatgatccgccatgcttccctctatgacccaacaatggtattaaagtcgacgattccacgaatgatgttcaagtgacgtgttctgt |
34674795 |
T |
|
| Q |
101 |
tgaaagagaaccaatggcagtgcaagtaagtgtgtgtggatgaaaaagcttacacttgaaggggagtatagtgaatggaaatcactcgtacttgagagca |
200 |
Q |
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| T |
34674796 |
tgaaagagaaccaatggcagtgcaagtaagtgtgtgtggatgaaaaagcttacacttgaaggggagtatagtgaatggaaatcactcgtacttgagagtg |
34674895 |
T |
|
| Q |
201 |
tagattgttgtggcaagtgtgaggtgagtaagaattcacatatttcttaaaaaagtagaggttgaacaatttacaagtgaaatgtccataaatctattat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674896 |
gagattgttgtggcaagtgtgaggtgagtaagaattcacatatttcttaaaaaagtagaggttgaacaatttacaagtgaaatgtccataaatctattat |
34674995 |
T |
|
| Q |
301 |
cttaaaatttcggatcaagatgtgatgtccaactcgctgttctggttctcgattaaatataaatgatccctaacttccccctatg |
385 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674996 |
cttaaaattttggatcaagatgtgatgtccaactcgctgttgtggttctcgattaaatataaatgatccctaacttccccctatg |
34675080 |
T |
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