View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15224_low_8 (Length: 372)
Name: NF15224_low_8
Description: NF15224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15224_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 24262236 - 24261967
Alignment:
| Q |
18 |
ctttgtgcttttgaccctttgcatgcttactgtattgatcacttgatggtcctatgaattacaccttcatgacataatgacaaggacaatacggtaacga |
117 |
Q |
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| T |
24262236 |
ctttgtggttttgaccctttgcatgcttactgtattgattacttgatggtcctatgaattacaccttcatgacataatgacaaggacaatacggtaacga |
24262137 |
T |
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| Q |
118 |
tatataggagatggagggggaaaagacttttattattgttgcctccctaatgggaacaagatttttattattgnnnnnnnnagaaatgattattgttgtt |
217 |
Q |
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| T |
24262136 |
tatataggagatggagggggaaaagacttttattattgttgcctccctaatgggaacaagatttttattattgttttttttagaaatgattattgttgtt |
24262037 |
T |
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| Q |
218 |
tcctttgttaggtgtgtttaccaaacactttataggtcatgtgtatctttcatttgtctctctctcgatg |
287 |
Q |
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| T |
24262036 |
tcctttgttaggtgtgtttaccaaacactttataggtcatgtgtatctttcatttgtctctctctcgatg |
24261967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 29899553 - 29899713
Alignment:
| Q |
18 |
ctttgtgcttttgaccctttgcatgcttactgtattgatcacttgatggtcctatgaattacaccttcatgacataatgacaaggacaatacggtaacga |
117 |
Q |
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| T |
29899553 |
ctttgtggttttgaacttttgcatgcttaccgtattgatcacatgatggtcctatgaattacaccttcatgacagaattgcaaggacaatatggtaacga |
29899652 |
T |
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| Q |
118 |
tatataggagatggagggggaaaagacttttattattgttgcctccctaatgggaacaaga |
178 |
Q |
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| T |
29899653 |
taaataggagatggagggggaaaagacttttattattgttgcctccctaatgggaaaaaga |
29899713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 29085582 - 29085740
Alignment:
| Q |
207 |
ttattgttgtttcctttgttaggtgtgtttaccaaa--cactttataggtcatgtgtatctttcatttgtctctctctcgatgatattaaactacctcat |
304 |
Q |
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||||||||||||| ||||||| |||||||||||||| | ||||||||||||||||||||||||||||| || ||||| |||||| ||||| |||| ||| |
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| T |
29085582 |
ttattgttgtttcttttgttaagtgtgtttaccaaatcccctttataggtcatgtgtatctttcatttgcctttctctagatgattttaaattaccacat |
29085681 |
T |
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| Q |
305 |
tgacagtgcattcattcaacttga---tgtcgtttagaactttttatccatattcttgg |
360 |
Q |
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| T |
29085682 |
tgacagtgcattctctcaacttgatattatcgtttagagttttttatccatattgttgg |
29085740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 24270079 - 24269998
Alignment:
| Q |
26 |
ttttgaccctttgcatgcttactgtattgatcacttgatggtcctatgaattacaccttcatgacataatgacaaggacaat |
107 |
Q |
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| T |
24270079 |
ttttgaccttttgcatgcttactgtattgatcacttgacggtcctatgaattacaacttcatgacggagtgacaatgacaat |
24269998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 29901531 - 29901610
Alignment:
| Q |
21 |
tgtgcttttgaccctttgcatgcttactgtattgatcacttgatggtcctatgaattacaccttcatgacataatgacaa |
100 |
Q |
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| T |
29901531 |
tgtggttttgaccttttgcatgcttactgtattgattacttgttcatcctatgaattacaccttcatgacagaatgacaa |
29901610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 29899782 - 29899838
Alignment:
| Q |
274 |
tctctctctcgatgatattaaactacctcattgacagtgcattcattcaacttgatg |
330 |
Q |
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| T |
29899782 |
tctctttctccatgaaattaaactacctcattgacagtgcatccatccaacttgatg |
29899838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 29899975 - 29900031
Alignment:
| Q |
274 |
tctctctctcgatgatattaaactacctcattgacagtgcattcattcaacttgatg |
330 |
Q |
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||||| |||| |||| |||||||||||||||||||||||||| ||| |||||||||| |
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| T |
29899975 |
tctctttctccatgaaattaaactacctcattgacagtgcatccatccaacttgatg |
29900031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 355
Target Start/End: Complemental strand, 24261970 - 24261942
Alignment:
| Q |
327 |
gatgtcgtttagaactttttatccatatt |
355 |
Q |
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| T |
24261970 |
gatgtcgtttagaactttttatccatatt |
24261942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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