View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15225_high_1 (Length: 534)
Name: NF15225_high_1
Description: NF15225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15225_high_1 |
 | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 12533555 - 12533042
Alignment:
| Q |
19 |
ctaaaatctaccagcaagtttt--agggttaaggcttaacacaagatgctttcagaagtgaactgcattaacaaacaggaccattcatttttatgcatca |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
12533555 |
ctaaaatctaccagcaagttttttagggttaaggcttagcacaagatgctttcagaagttaattgcattaacgaacatgaccattcatttttatgcatca |
12533456 |
T |
|
| Q |
117 |
tagattaatatgagccattttgtaaagttgttgcagataagctgcaaactgaattaaacaaatagtttaagcagatatgcacccatgaatggtgccctat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12533455 |
tagattaatatgagccattttgtaaagttgttgcagacaagctgcaaactgaattaaacaaggagtttaagcagatgtgcacccatgaatggtgccctat |
12533356 |
T |
|
| Q |
217 |
agaacagaagtagtaaatgctgatgttttttgctcaatgcacttaccattattgcaaaaatccttgatatactaaagacagctacttcattttatatttg |
316 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
12533355 |
agaacagaagtagtaaatgatgatgttttttgctcaatgcacttatcattattgcaaaaatccttgatatagtaaagacagctacttcagtttatatttg |
12533256 |
T |
|
| Q |
317 |
tggagggctcgagctaaattcctgttacatgtatcatgtgctcaattatagctactcagcatccacaaatgaaattgaagataagcattggtataagtag |
416 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12533255 |
tgcagggctcgaggtaaattcctgttacatgtgttgtgtgctcaattatagctactcagcatccacaaatgaaattgaagataagcattggtataagtag |
12533156 |
T |
|
| Q |
417 |
tgtgctcaatgtaggcctacagctgatgaaattactcctttcagttctcaatgtaggttggcttacgctatgtgatcaggacctcaacattcctaaaaaa |
516 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12533155 |
tgtgctcagtgtaggcctacacctgatgaaataactcctttcagttctcaatgtacgttggcttacgctatgtgataaggacctcaacattcctaaaaaa |
12533056 |
T |
|
| Q |
517 |
ttagcttcttctca |
530 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12533055 |
ttagcttcttctca |
12533042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 12534543 - 12534156
Alignment:
| Q |
19 |
ctaaaatctaccagcaagtttt--agggttaaggcttaacacaagatgctttcagaagtgaactgcattaacaaacaggaccattcatttttatgcatca |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
12534543 |
ctaaaatctaccagcaagttttttagggttaaggcttagcacaagatgctttcagaagttaattgcattaacgaacatgaccattcatttttatgcatca |
12534444 |
T |
|
| Q |
117 |
tagattaatatgagccattttgtaaagttgttgcagataagctgcaaactgaattaaacaaatagtttaagcagatatgcacccatgaatggtgccctat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12534443 |
tagattaatatgagccattttgtaaagttgttgcagacaagctgcaaactgaattaaacaaggagtttaagcagatgtgcacccatgaatggtgccctat |
12534344 |
T |
|
| Q |
217 |
agaacagaagtagtaaatgctgatgttttttgctcaatgcacttaccattattgcaaaaatccttgatatactaaagacagctacttcattttatatttg |
316 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
12534343 |
agaacagaagtagtaaatgatgatgttttttgctcaatgcacttatcattattgcaaaaatccttgatatattaaagacagctacttcagtttatatttg |
12534244 |
T |
|
| Q |
317 |
tggagggctcgagctaaattcctgttacatgtatcatgtgctcaattatagctactcagcatccacaaatgaaattgaagataagcat |
404 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12534243 |
tgcagggctcgaggtaaattcctgttacatgtgttgtgtgctcaattatagctactcagcatccacaaatgaaattgaagataagcat |
12534156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Original strand, 29912 - 30419
Alignment:
| Q |
19 |
ctaaaatctaccagcaagtttt--agggttaaggcttaacacaagatgctttcagaagtgaactgcattaacaaacaggaccattcatttttatgcatca |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29912 |
ctaaaatctaccagcaagttttttagggataaggtttaacacaagatgctttcagaagtgaactgcattaacgaacaggaccattcatttttatgcatca |
30011 |
T |
|
| Q |
117 |
tagattaatatgagccattttgtaaagttgttgcagataagctgcaaactgaattaaacaaatagtttaagcagatatgcacccatgaatggtgccctat |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30012 |
tagattaatataagccattttgtaaagttgttgcaggcaagctgcaaactgaattaaacaaggagtttaagcagatatgcacccatgaatggtgccctat |
30111 |
T |
|
| Q |
217 |
agaacagaagtagtaaatgctgatgttttttgctcaatgcacttaccattattgcaaaaatccttgatatactaaagacagctacttcattttatatttg |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30112 |
agaacagaagtagtaaatgc--atgttttttgctcaatgcacttatcattattgcaaaaatccttgatatactaaagacagctacttcagtttatatttg |
30209 |
T |
|
| Q |
317 |
tggagggctcgagctaaattcctgttacatgtatcatgtgctcaattatagctactcagcatccacaaatgaaattgaagataagcattggtataagtag |
416 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30210 |
tgcagggctcgaggtaaattcctgttacatgtgttgtgtgctcaattatagctactcagcatccacaaatgaaattgaagataagcactggtataagtag |
30309 |
T |
|
| Q |
417 |
tgtgctcaatgtaggcctacagctgatgaaattactcctttcagttctcaatgtaggttggcttacgctatgtgatcaggacctcaacattcctaaaaaa |
516 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30310 |
tgtgctcaatgtaggcctacacctgatgaaataactcctttcagttctcaatgtaggctggcttacgctatgtgataaggacctcaacattcctaaaaaa |
30409 |
T |
|
| Q |
517 |
ttagcttctt |
526 |
Q |
| |
|
|||||||||| |
|
|
| T |
30410 |
ttagcttctt |
30419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University