View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15225_high_4 (Length: 367)

Name: NF15225_high_4
Description: NF15225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15225_high_4
NF15225_high_4
[»] chr4 (5 HSPs)
chr4 (41-289)||(2565927-2566175)
chr4 (128-184)||(43429325-43429381)
chr4 (128-184)||(21438386-21438442)
chr4 (128-184)||(51206853-51206909)
chr4 (66-105)||(1757358-1757397)
[»] chr7 (4 HSPs)
chr7 (30-117)||(24007376-24007463)
chr7 (66-103)||(7792353-7792390)
chr7 (66-119)||(33618193-33618246)
chr7 (69-101)||(38599738-38599770)
[»] chr2 (5 HSPs)
chr2 (128-184)||(6256953-6257009)
chr2 (128-184)||(12328773-12328829)
chr2 (66-119)||(43871378-43871431)
chr2 (66-100)||(9171577-9171611)
chr2 (66-118)||(42554034-42554086)
[»] chr1 (2 HSPs)
chr1 (128-184)||(4437186-4437242)
chr1 (128-184)||(25668984-25669040)
[»] chr3 (3 HSPs)
chr3 (66-119)||(51390518-51390571)
chr3 (128-184)||(54523246-54523302)
chr3 (29-103)||(34848184-34848258)
[»] chr5 (1 HSPs)
chr5 (66-119)||(25595424-25595477)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 41 - 289
Target Start/End: Complemental strand, 2566175 - 2565927
Alignment:
Q  41 gatgtatgaagcagtgatagtaatgaggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgtagttttaattagaatgacgtaga 140  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2566175 gatgtatgaagcagtgatagtaatgaggataataaagtaacgaaacaataacgatgtaatcaacattaacatgatgtagttttaattagaatgacgtaga 2566076  T
Q  141 agacggatgaaggaagttagacaaacaagatgaataatatagaaccatgaatttatgatatgatttgaaagtctagtttcttaattcaagtggcactcta 240  Q
    || |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2566075 aggcggatgaaggaagttagacaaacaagatgaataacatagaagcatgaatttatgatatgatttgaaagtctagtttcttaattcaagtggcactcta 2565976  T
Q  241 tgttttgtatcagtaacttaaatcaatgctttgatagttttgttagata 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2565975 tgttttgtatcagtaacttaaatcaatgctttgatagttttgttagata 2565927  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 43429325 - 43429381
Alignment:
Q  128 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataatatagaa 184  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  43429325 agaatgacatagaagaaggatgaaggaagttagacaaaccagatgaataacatagaa 43429381  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 21438442 - 21438386
Alignment:
Q  128 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataatatagaa 184  Q
    |||||| | ||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  21438442 agaatggcatagaagaaggatgaaggaagttagacaaaccagatgaataacatagaa 21438386  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 51206853 - 51206909
Alignment:
Q  128 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataatatagaa 184  Q
    |||||| | ||||| | |||||||||||||||||||||| |||||||||| ||||||    
T  51206853 agaatggcatagaaaaaggatgaaggaagttagacaaaccagatgaataacatagaa 51206909  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 1757397 - 1757358
Alignment:
Q  66 aggataataaagtaacggaacaataacgatgtaatcaaca 105  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  1757397 aggataataaactaacgaaacaataacgatgtaatcaaca 1757358  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 24007463 - 24007376
Alignment:
Q  30 gaaacattaacgatgtatgaagcagtgatagtaatgaggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgt 117  Q
    |||||| ||||||| |||||||||||||||| ||| ||||||||||| ||| | |||||||| ||||||||||| | ||||| |||||    
T  24007463 gaaacaataacgatatatgaagcagtgatagcaataaggataataaaataatgaaacaataaagatgtaatcaataacaacacgatgt 24007376  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 7792390 - 7792353
Alignment:
Q  66 aggataataaagtaacggaacaataacgatgtaatcaa 103  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  7792390 aggataataaagtaacgaaacaataacgatgtaatcaa 7792353  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 33618193 - 33618246
Alignment:
Q  66 aggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgtag 119  Q
    ||||||||||||||| | |||||||||||||||||| | | ||||| |||||||    
T  33618193 aggataataaagtaaagaaacaataacgatgtaatcgataacaacacgatgtag 33618246  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 38599738 - 38599770
Alignment:
Q  69 ataataaagtaacggaacaataacgatgtaatc 101  Q
    |||||||||||||| ||||||||||||||||||    
T  38599738 ataataaagtaacgaaacaataacgatgtaatc 38599770  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 6257009 - 6256953
Alignment:
Q  128 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataatatagaa 184  Q
    |||||| | ||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  6257009 agaatggcatagaagaaggatgaaggaagttagacaaaccagatgaataacatagaa 6256953  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 12328829 - 12328773
Alignment:
Q  128 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataatatagaa 184  Q
    |||||| | ||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  12328829 agaatggcatagaagaaggaagaaggaagttagacaaacaagatgaataacatagaa 12328773  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 43871431 - 43871378
Alignment:
Q  66 aggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgtag 119  Q
    |||||||||||| |||| |||||||||||||||||| | | |||||||||||||    
T  43871431 aggataataaagcaacgaaacaataacgatgtaatctataacaacatgatgtag 43871378  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 9171611 - 9171577
Alignment:
Q  66 aggataataaagtaacggaacaataacgatgtaat 100  Q
    ||||||||||||||||| |||||||||||||||||    
T  9171611 aggataataaagtaacgaaacaataacgatgtaat 9171577  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 42554086 - 42554034
Alignment:
Q  66 aggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgta 118  Q
    ||||||||| |||||||  ||||||||||||||||| | | ||||||||||||    
T  42554086 aggataatagagtaacgagacaataacgatgtaatcgataacaacatgatgta 42554034  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 4437186 - 4437242
Alignment:
Q  128 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataatatagaa 184  Q
    |||||| | ||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  4437186 agaatggcatagaagaaggaagaaggaagttagacaaacaagatgaataacatagaa 4437242  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 25668984 - 25669040
Alignment:
Q  128 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataatatagaa 184  Q
    |||||| | ||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  25668984 agaatggcatagaagaaggaagaaggaagttagacaaacaagatgaataacatagaa 25669040  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 51390518 - 51390571
Alignment:
Q  66 aggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgtag 119  Q
    ||||||||||||||||| |||||| ||||||||||| | | |||||||||||||    
T  51390518 aggataataaagtaacgaaacaatgacgatgtaatcgataacaacatgatgtag 51390571  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 54523246 - 54523302
Alignment:
Q  128 agaatgacgtagaagacggatgaaggaagttagacaaacaagatgaataatatagaa 184  Q
    |||||| | ||||||| |||||||| ||||||||||||| |||||||||| ||||||    
T  54523246 agaatggcatagaagaaggatgaagaaagttagacaaaccagatgaataacatagaa 54523302  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 34848184 - 34848258
Alignment:
Q  29 tgaaacattaacgatgtatgaagcagtgatagtaatgaggataataaagtaacggaacaataacgatgtaatcaa 103  Q
    ||||||| |||| |||||||||| |||||||  ||| ||| ||||||||||||  ||||||||  ||||||||||    
T  34848184 tgaaacagtaacaatgtatgaaggagtgataacaataaggttaataaagtaacaaaacaataataatgtaatcaa 34848258  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 25595477 - 25595424
Alignment:
Q  66 aggataataaagtaacggaacaataacgatgtaatcaacatcaacatgatgtag 119  Q
    ||||||||| ||||| | |||||||||||||||||| | ||||||| |||||||    
T  25595477 aggataatagagtaaagaaacaataacgatgtaatcgatatcaacacgatgtag 25595424  T

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