View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15225_high_5 (Length: 358)
Name: NF15225_high_5
Description: NF15225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15225_high_5 |
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| [»] scaffold1445 (1 HSPs) |
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Alignment Details
Target: scaffold1445 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold1445
Description:
Target: scaffold1445; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 257
Target Start/End: Complemental strand, 852 - 604
Alignment:
| Q |
26 |
attcattcataactagtttgaaaacagagaagtaaaaatttgaaag-----------------ttgaaacgacgacgttttggtttgatttgaacgtacg |
108 |
Q |
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| T |
852 |
attcattcataactagtttgaaaacagagaagtaaaaatttgaaaggaagaataaaagatgagttgaaacgacgacgttttggtttgatttgaacgtacg |
753 |
T |
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| Q |
109 |
gacggagtaagaaataaagtgtgaagtcatgcaatgcagcagtcgagagagtttgttggttgattgattgatgggtcaatgagattcaaatgaagtgaaa |
208 |
Q |
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| T |
752 |
gacggagtaagaaataaagtgtgaagtcatgcaatgcagcagtcgagagagtttgttggttgattgattgatgggtcaatgagattcaaatgaagtgaaa |
653 |
T |
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| Q |
209 |
actcactgatacacgttttctgtttttagttacactttctttaaaatac |
257 |
Q |
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| T |
652 |
actcactgatacacgttttctgtttttagttacactttctttaaaatac |
604 |
T |
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