View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15225_high_6 (Length: 302)
Name: NF15225_high_6
Description: NF15225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15225_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 34260747 - 34261018
Alignment:
| Q |
11 |
ataattctcaccaagctataagaataggttattcgggccaaccataagctgacaatttttatggaaaccttacctcaaaataaatttatttgctcactag |
110 |
Q |
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| T |
34260747 |
ataattctcaccaagctataagaataggttattcggcacaaccataagctgacaatttttatggaaaccttacctcaaaataaatttatttgctcactag |
34260846 |
T |
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| Q |
111 |
aaaacagttatttattacaatcattgtgccaatgtttgaaggattatatataagtagctgtagtttatgtgttatctttttctttcctcaatttcttgaa |
210 |
Q |
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| T |
34260847 |
aaaacagttatttattacaatcattgtgccaatgtttgaaggattatatataagtagctgtagtttatgtgttatctttttcttccctcaatttcttgaa |
34260946 |
T |
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| Q |
211 |
gcttgcagaagctttctctagggatgggggaatgtcgttttcagctacttgtgaaaatctccaacctcgacc |
282 |
Q |
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| T |
34260947 |
gcttgcagaagctttctctagggatgggggaatgtcgttttcagctacttgtgaaaatctccaacctcgacc |
34261018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 49 - 282
Target Start/End: Original strand, 34250866 - 34251098
Alignment:
| Q |
49 |
caaccataagctgacaatttttatggaaaccttacctcaaaataaatttatttgctcactagaaaac----agttatttattacaatcattgtgccaatg |
144 |
Q |
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| T |
34250866 |
caaccatatgctgacaatttgtaaggaaaccttttctcaaaatgaatttattttcctactagaagacatttatttatttattacaatca-tatgccagtg |
34250964 |
T |
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| Q |
145 |
tttgaaggattatatataagtagctgtagtttatgtgttatctttttctttcctcaatttcttgaagcttgcagaagctttctctagggatgggggaatg |
244 |
Q |
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| T |
34250965 |
tttggaggattatatataagtagttgtcgtttatgtgtta-cttttttccccctcaatttcttgaagcttgcagaagctttctctagggat---ggaatg |
34251060 |
T |
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| Q |
245 |
tcgttttcagctacttgtgaaaatctccaacctcgacc |
282 |
Q |
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| T |
34251061 |
tcgttttcggctacttgtgaaaatctcctccctcgacc |
34251098 |
T |
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