View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15225_low_3 (Length: 378)
Name: NF15225_low_3
Description: NF15225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15225_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 31555746 - 31555393
Alignment:
| Q |
1 |
acaatatacgtttaatgtactggtaattatacatggtttcattgtcaaagaaaaaataaaattgagctcaatttaagttacaaagaaagtcaaaatttac |
100 |
Q |
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| T |
31555746 |
acaatatacgtttaatgtactggtaattatacatggtttcattgtcaaagaaaaaataaaattgcgctcaatttaagttacaaagaaagtcaaaatttac |
31555647 |
T |
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| Q |
101 |
agtagatctttgcctataaagcaaatacactctttagattggacgtgttttgatgtctgacaccgacacatacatgatttcatgtgtcaaatgcagtgaa |
200 |
Q |
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| T |
31555646 |
gataggtctttgcctataaagcacatacactctttagattggatgtgtttcggtgtctgacaccgacagatacatgatttcatgtgtcagatgcagtgaa |
31555547 |
T |
|
| Q |
201 |
gggaattggttgtgttataaaatgatgacaagaaaaattgagtgtggctctgagcaagaatagtgaattagaagaattaaaaacgtttagtcactattga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31555546 |
gggaattggttgtgttataaaatgatgacaagaaaaattgagtgtggctctgagcaagaatagtgaattagaagaattaaaaacgtttagtcactattga |
31555447 |
T |
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| Q |
301 |
aatgatgaagatcaccatctcaaacaactcaacctgaccacctaatatctaccc |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31555446 |
aatgatgaagatcaccatctcaaacaactcaacctgaccacctaatatctaccc |
31555393 |
T |
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