View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15225_low_9 (Length: 250)

Name: NF15225_low_9
Description: NF15225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15225_low_9
NF15225_low_9
[»] chr8 (5 HSPs)
chr8 (1-220)||(898405-898624)
chr8 (115-218)||(14504071-14504174)
chr8 (115-209)||(15992105-15992199)
chr8 (73-124)||(45383632-45383683)
chr8 (130-218)||(36307743-36307831)
[»] chr5 (5 HSPs)
chr5 (125-220)||(27041424-27041519)
chr5 (31-128)||(27053438-27053534)
chr5 (88-218)||(42763605-42763735)
chr5 (102-161)||(19233911-19233970)
chr5 (115-218)||(22290726-22290829)
[»] chr4 (5 HSPs)
chr4 (52-218)||(17456272-17456438)
chr4 (115-218)||(30857712-30857815)
chr4 (115-218)||(55225962-55226065)
chr4 (103-220)||(12353479-12353596)
chr4 (109-146)||(48211868-48211905)
[»] chr2 (2 HSPs)
chr2 (88-218)||(27070688-27070818)
chr2 (89-206)||(20469503-20469620)
[»] chr3 (7 HSPs)
chr3 (53-218)||(8969994-8970159)
chr3 (115-218)||(6007722-6007825)
chr3 (55-218)||(14505583-14505746)
chr3 (115-218)||(17788502-17788605)
chr3 (100-220)||(49497713-49497833)
chr3 (55-220)||(2437896-2438061)
chr3 (81-218)||(34933464-34933601)
[»] chr6 (1 HSPs)
chr6 (81-220)||(15925141-15925280)
[»] chr1 (3 HSPs)
chr1 (109-218)||(2004259-2004368)
chr1 (130-218)||(38490608-38490696)
chr1 (104-209)||(45636283-45636388)
[»] chr7 (5 HSPs)
chr7 (81-218)||(5612517-5612654)
chr7 (25-161)||(22908342-22908478)
chr7 (102-150)||(40064906-40064954)
chr7 (88-179)||(9815894-9815985)
chr7 (88-179)||(10717819-10717910)
[»] scaffold0114 (1 HSPs)
scaffold0114 (81-220)||(13143-13282)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 898624 - 898405
Alignment:
Q  1 atgattacatcaattatgggagtacaagttgttcttggaacagttaaatatttgggtttaccttctatagtaggaagaaacaaacaagcaaccttcagct 100  Q
    ||||||||||||||| |||||||||||| ||||||||| |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  898624 atgattacatcaattctgggagtacaagctgttcttggcacaggtaaatatctgggtttaccttctatggtaggaagaaacaaacaagcaaccttcagct 898525  T
Q  101 ttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  898524 ttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttaccaaaagctggtagagaagttatgataaagtatgttttgcaagccat 898425  T
Q  201 tccatcttacgttatgagca 220  Q
    ||||||||||||||||||||    
T  898424 tccatcttacgttatgagca 898405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 14504071 - 14504174
Alignment:
Q  115 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 214  Q
    ||||||||||||||||||||||||||  |||||||| | || ||||| ||| |||| || |||||||| | ||||||||| || ||||| ||||| || |    
T  14504071 gtttggcagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgttttgcaggctattccttcttatgtga 14504170  T
Q  215 tgag 218  Q
    ||||    
T  14504171 tgag 14504174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 15992199 - 15992105
Alignment:
Q  115 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatctta 209  Q
    ||||||||||||||||||||||||||  |||||||| | || ||||  ||| |||| || |||||||| | ||||||||| || ||||| |||||    
T  15992199 gtttggcagaaaatcaattcctggagttgtaagtgtctctctaaagtaggtcgagaggtcatgataaaatctgttttgcaggctattccttctta 15992105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 45383683 - 45383632
Alignment:
Q  73 ggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcaga 124  Q
    |||||||| ||| |||| ||||||| |||||||||||||||||| |||||||    
T  45383683 ggaagaaataaaaaagctaccttcaactttattaaagatagagtatggcaga 45383632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 36307831 - 36307743
Alignment:
Q  130 aattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgag 218  Q
    ||||| ||||| ||||||||| | || ||||| ||| | ||||||||||||||||  ||| | ||||||||||| || ||||| |||||    
T  36307831 aattcttggagtagtaagtgtctctctaaagcaggtcgggaagttatgataaagtcagttctccaagccattccttcctacgtcatgag 36307743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 27041519 - 27041424
Alignment:
Q  125 aaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgagca 220  Q
    |||| ||||| ||||||||||| ||| | ||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  27041519 aaattaattcttggagcagtaaatgtctgtcaaaagctggtagagaggttatgattaagtctgttttgcaagccattccctcttacgttatgagca 27041424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 27053534 - 27053438
Alignment:
Q  31 gttcttggaacagttaaatatttgggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaat 128  Q
    |||||||  |||| ||||||| ||||||| |||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||    
T  27053534 gttcttgttacaggtaaatatctgggttt-ccttctatggtaggaaggaataaacaagcaaccttcagctttactaaagatagagtttggcagaaaat 27053438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 42763605 - 42763735
Alignment:
Q  88 gcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatg 187  Q
    ||||| ||||||||||| |||||||| |||||||| ||||||| |  |||||||||||| ||| |||| ||||| ||| |||| ||||||||||||| ||    
T  42763605 gcaactttcagctttatcaaagatagggtttggcaaaaaatcagtagctggagcagtaaatgtctatccaaagcaggtcgagaggttatgataaagtctg 42763704  T
Q  188 ttttgcaagccattccatcttacgttatgag 218  Q
    || | ||||| || || || || ||||||||    
T  42763705 ttcttcaagctatcccttcctatgttatgag 42763735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 19233911 - 19233970
Alignment:
Q  102 tattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagc 161  Q
    |||||||||| |||||||||||||||| ||||  ||||| |||||||||||||| |||||    
T  19233911 tattaaagatcgagtttggcagaaaataaattattggagtagtaagtgtttatctaaagc 19233970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 22290726 - 22290829
Alignment:
Q  115 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 214  Q
    |||||| |||||||||||||||||||  |||||||| | || ||||| ||| |||| || |||||||| | ||||||||| || ||||| ||||| || |    
T  22290726 gtttggtagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgttttgcaggctattccttcttatgtga 22290825  T
Q  215 tgag 218  Q
    ||||    
T  22290826 tgag 22290829  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 218
Target Start/End: Original strand, 17456272 - 17456438
Alignment:
Q  52 ttgggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtt 151  Q
    |||||||||||||| || |||||| | | |||| ||||||| ||||| || || || ||||  |||||||| ||||| | |  |||||| ||||| ||||    
T  17456272 ttgggtttaccttccatggtaggacgtagcaaaaaagcaactttcagtttcatcaaggataaggtttggcaaaaaataagtagctggagtagtaaatgtt 17456371  T
Q  152 tatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgag 218  Q
    |||| ||||| |||||||| |||||||| |||| |||||| ||||| || |||||||| ||||||||    
T  17456372 tatccaaagcaggtagagaggttatgatcaagtctgtttttcaagctatcccatcttatgttatgag 17456438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 30857712 - 30857815
Alignment:
Q  115 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 214  Q
    |||||||||| |||||||||||||||  |||||||| | || ||||| ||| |||| ||||||||||| | ||||||||| || ||||| ||||| || |    
T  30857712 gtttggcagagaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggttatgataaaatctgttttgcaggctattccttcttatgtga 30857811  T
Q  215 tgag 218  Q
    ||||    
T  30857812 tgag 30857815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 55225962 - 55226065
Alignment:
Q  115 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 214  Q
    ||||||||||||||||||||||||||  |||||||| | || ||||| ||| |||| || |||||||| | ||||| ||| || ||||| ||||| || |    
T  55225962 gtttggcagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgtttggcaggctattccttcttatgtga 55226061  T
Q  215 tgag 218  Q
    ||||    
T  55226062 tgag 55226065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 12353479 - 12353596
Alignment:
Q  103 attaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattc 202  Q
    |||||||| || || ||||| ||||||||||| ||||| ||||| ||||| || || || |   | || || |||||||||| |||||||||||| ||||    
T  12353479 attaaagacagggtgtggcaaaaaatcaattcgtggagtagtaaatgtttgtcgaaggcagagcgcgaggtcatgataaagtctgttttgcaagctattc 12353578  T
Q  203 catcttacgttatgagca 220  Q
    |||| ||||| |||||||    
T  12353579 catcgtacgtcatgagca 12353596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 48211868 - 48211905
Alignment:
Q  109 gatagagtttggcagaaaatcaattcctggagcagtaa 146  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  48211868 gatagagtttggaagaaaatcaattcgtggagcagtaa 48211905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 27070688 - 27070818
Alignment:
Q  88 gcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatg 187  Q
    ||||| ||||||||||| |||||||| |||||||| ||||||| |  |||||||||||| |||  ||| ||||| ||| |||| ||||||||||||| ||    
T  27070688 gcaactttcagctttatcaaagatagggtttggcaaaaaatcagtagctggagcagtaaatgtcaatccaaagcaggtcgagaggttatgataaagtctg 27070787  T
Q  188 ttttgcaagccattccatcttacgttatgag 218  Q
    || | ||||| || || || || ||||||||    
T  27070788 ttcttcaagctatcccttcctatgttatgag 27070818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 20469503 - 20469620
Alignment:
Q  89 caaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgt 188  Q
    |||| ||||| ||||| |||||||| |||||||| |||||||    |||||||||||| ||  |||| ||||| ||| |||| |||||||| |||| |||    
T  20469503 caactttcagttttatcaaagatagggtttggcaaaaaatcagcagctggagcagtaaatgcctatccaaagcaggtcgagaggttatgatcaagtctgt 20469602  T
Q  189 tttgcaagccattccatc 206  Q
    | | ||||| || |||||    
T  20469603 tcttcaagctatcccatc 20469620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 8970159 - 8969994
Alignment:
Q  53 tgggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgttt 152  Q
    ||||| |||| ||||| ||||||||||  ||| ||||||||||||  ||||||||||||||||| |||||||| || | |  |||||||||||| |||||    
T  8970159 tgggtctaccatctatggtaggaagaagtaaaaaagcaaccttcaagtttattaaagatagagtgtggcagaagattagtagctggagcagtaaatgttt 8970060  T
Q  153 atcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgag 218  Q
     || ||||| || || || || ||||| || | |||| | ||| | |||||||| || ||||||||    
T  8970059 gtctaaagcaggaagggaggtcatgatcaaatctgttcttcaatctattccatcctatgttatgag 8969994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 6007825 - 6007722
Alignment:
Q  115 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 214  Q
    |||||||||| |||||||||||||||  |||||||| | || ||||| ||| |||| ||||||||||| | ||||||||| || ||||| ||||| || |    
T  6007825 gtttggcagagaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggttatgataaaatctgttttgcaggctattccttcttatgtga 6007726  T
Q  215 tgag 218  Q
    ||||    
T  6007725 tgag 6007722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 218
Target Start/End: Complemental strand, 14505746 - 14505583
Alignment:
Q  55 ggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttat 154  Q
    ||||||||||| || ||| || | | |||| ||||||| ||||| ||||| || ||||| || ||||| ||||| | |   ||||||||||| ||||| |    
T  14505746 ggtttaccttcaattgtaagacgtagcaaaaaagcaactttcagttttatcaaggatagggtatggcaaaaaataagtatttggagcagtaaatgtttgt 14505647  T
Q  155 caaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgag 218  Q
    | ||||| |||||||| |||||||| || | |||| | ||||| ||||||||||| ||||||||    
T  14505646 ccaaagcaggtagagaggttatgatcaaatttgttcttcaagctattccatcttatgttatgag 14505583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 17788502 - 17788605
Alignment:
Q  115 gtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgtta 214  Q
    ||||||||||||||||||||||||||  |||||||| | || ||||| ||| |||| || |||||||| | || |||||| || ||||| ||||| || |    
T  17788502 gtttggcagaaaatcaattcctggagtggtaagtgtctctctaaagcaggtcgagaggtcatgataaaatctgctttgcaggctattccttcttatgtga 17788601  T
Q  215 tgag 218  Q
    ||||    
T  17788602 tgag 17788605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 49497713 - 49497833
Alignment:
Q  100 tttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagcca 199  Q
    ||||| |||||| ||||||||||| |||| ||||| ||||| ||||| |||||||| || || ||  | || |||||||| || ||||| ||||| ||||    
T  49497713 tttatcaaagatcgagtttggcaggaaattaattcttggagtagtaaatgtttatctaaggcagggcgtgaggttatgattaaatatgtcttgcaggcca 49497812  T
Q  200 ttccatcttacgttatgagca 220  Q
    || | || || ||||||||||    
T  49497813 ttacttcgtatgttatgagca 49497833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 2437896 - 2438061
Alignment:
Q  55 ggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttat 154  Q
    ||||||||||| || |||||  ||| |||| ||||||||||||| || ||||| || ||||| ||||| | ||||| |   ||||||||||| || || |    
T  2437896 ggtttaccttcaatggtagggcgaagcaaaaaagcaaccttcagtttcattaaggacagagtgtggcaaagaatcagtagttggagcagtaaatgcttgt 2437995  T
Q  155 caaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgagca 220  Q
    | ||||||||||| || || ||||| || |  ||  | ||||| ||||||||||| || |||||||    
T  2437996 ctaaagctggtagggaggtcatgatcaaatcggtccttcaagctattccatcttatgtcatgagca 2438061  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 34933464 - 34933601
Alignment:
Q  81 caaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgata 180  Q
    |||| ||||||| |||| ||| || || |||||||| ||||| | ||||| |  |||||||||||| ||||| || ||||| || || || ||||||||     
T  34933464 caaaaaagcaactttcaacttcatcaaggatagagtgtggcaaagaatcagtagctggagcagtaaatgtttgtctaaagccgggagggaggttatgatc 34933563  T
Q  181 aagtatgttttgcaagccattccatcttacgttatgag 218  Q
    || | |||| | ||||| ||||||||||| || |||||    
T  34933564 aaatctgttcttcaagctattccatcttatgtcatgag 34933601  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 15925280 - 15925141
Alignment:
Q  81 caaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgata 180  Q
    |||| ||||||| |||||||| |||||||||||||| |||||||||||||     ||| |||  || ||||| || ||||| ||||| |||||||||||     
T  15925280 caaaaaagcaacattcagcttcattaaagatagagtgtggcagaaaatcagcaattggtgcaacaaatgtttgtccaaagcaggtagggaagttatgatc 15925181  T
Q  181 aagtatgttttgcaagccattccatcttacgttatgagca 220  Q
    || | |||| | ||||| ||||| ||||| ||||||||||    
T  15925180 aaatttgttcttcaagctattccgtcttatgttatgagca 15925141  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 218
Target Start/End: Complemental strand, 2004368 - 2004259
Alignment:
Q  109 gatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatctt 208  Q
    ||||||||||| |||||||| || || ||||||||||| |||||||  || || ||  ||||||||||||||||||  || ||||| || ||||||||||    
T  2004368 gatagagtttgacagaaaattaactcgtggagcagtaaatgtttattgaaggccggacgagaagttatgataaagtccgtcttgcaggctattccatctt 2004269  T
Q  209 acgttatgag 218  Q
    | || |||||    
T  2004268 atgtgatgag 2004259  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 38490696 - 38490608
Alignment:
Q  130 aattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattccatcttacgttatgag 218  Q
    ||||| ||||| ||||||||| | || ||||| ||| | ||||||||||||||||  ||| | ||||||||||| |||||||| |||||    
T  38490696 aattcttggagtagtaagtgtctctctaaagcaggtcgggaagttatgataaagtcagttcttcaagccattccttcttacgtcatgag 38490608  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 45636283 - 45636388
Alignment:
Q  104 ttaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgataaagtatgttttgcaagccattcc 203  Q
    |||||||| | || ||||||||||||||| | |||||||| || ||  | || ||||| ||| | || ||||||||||| |  |||||||||||||||||    
T  45636283 ttaaagatcgcgtgtggcagaaaatcaatacttggagcagcaaatgcctctctaaagcgggtcgtgaggttatgataaaatccgttttgcaagccattcc 45636382  T
Q  204 atctta 209  Q
     |||||    
T  45636383 gtctta 45636388  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 5612654 - 5612517
Alignment:
Q  81 caaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgata 180  Q
    |||| ||||||| | |||||| || || |||||||||||||| ||||| | |   ||||| ||||| ||||| || ||||| |||||||| ||||||||     
T  5612654 caaaaaagcaacttccagcttcatcaaggatagagtttggcaaaaaataagtagttggagtagtaaatgtttgtccaaagcaggtagagaggttatgatc 5612555  T
Q  181 aagtatgttttgcaagccattccatcttacgttatgag 218  Q
    || | |||| | ||||| |||||||||||  |||||||    
T  5612554 aaatctgttcttcaagctattccatcttatattatgag 5612517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 22908342 - 22908478
Alignment:
Q  25 caagttgttcttggaacagttaaatatttgggtttaccttctatagtaggaagaaacaaacaagcaaccttcagctttattaaagatagagtttggcaga 124  Q
    ||||||||||| || || |  |||||||||||  | ||||||||  ||||||| |  ||| || | || ||||||||||| ||||||||| ||||| |||    
T  22908342 caagttgttctaggtactggcaaatatttggggcttccttctatgataggaaggagaaaaaaatccactttcagctttatgaaagatagaatttggaaga 22908441  T
Q  125 aaatcaattcctggagcagtaagtgtttatcaaaagc 161  Q
    |  ||||||| ||||| |||||  |||||||||||||    
T  22908442 agttcaattcatggagtagtaaaagtttatcaaaagc 22908478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 40064954 - 40064906
Alignment:
Q  102 tattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgt 150  Q
    |||||| |||||||||||||| ||||||||||| ||||| |||||||||    
T  40064954 tattaaggatagagtttggcaaaaaatcaattcttggagtagtaagtgt 40064906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 9815985 - 9815894
Alignment:
Q  88 gcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgat 179  Q
    ||||||||||| ||||| |||||| |  | | ||| |||||||||   |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  9815985 gcaaccttcagatttatcaaagatcgtatatagcataaaatcaatagttggagcagcaagtgtttatctaaagctggcagagaggttatgat 9815894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 10717910 - 10717819
Alignment:
Q  88 gcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgat 179  Q
    ||||||||||| ||||| |||||| |  | | ||| |||||||||   |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  10717910 gcaaccttcagatttatcaaagatcgtatatagcataaaatcaatagttggagcagcaagtgtttatctaaagctggcagagaggttatgat 10717819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 13282 - 13143
Alignment:
Q  81 caaacaagcaaccttcagctttattaaagatagagtttggcagaaaatcaattcctggagcagtaagtgtttatcaaaagctggtagagaagttatgata 180  Q
    |||| ||||||| ||||||||||| || |||||||| ||||| | ||| | |   |||||||| || ||||| || |||||||| || || ||||||||     
T  13282 caaaaaagcaactttcagctttatcaaggatagagtgtggcaaagaattagtagttggagcagcaaatgtttgtctaaagctgggagggaggttatgatc 13183  T
Q  181 aagtatgttttgcaagccattccatcttacgttatgagca 220  Q
    || | |||| | ||||| ||||||||||| || |||||||    
T  13182 aaatctgttcttcaagctattccatcttatgtcatgagca 13143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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