View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15226_high_1 (Length: 514)
Name: NF15226_high_1
Description: NF15226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15226_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 3088781 - 3089286
Alignment:
| Q |
1 |
attagcagattactatgacaaagatgtgacactcctcctccaagacattgagaaaaactataccaatgtaagtaacattatttaaatttttctgtcactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088781 |
attagcagattactatgacaaagatgtgacactcctcctccaagacattgagaaaaactataccaatgtaagtaacattatttaaatttttctgtcactc |
3088880 |
T |
|
| Q |
101 |
ttcctagattgaatgaacacatggattttttattggctccaaataaaatcaacttattatttcttgtatgcagggaatctggtcagatgatgttgcttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088881 |
ttcctagattgaatgaacacatggattttttattggctccaaataaaatcaacttattatttcttgtatgcagggaatctggtcagatgatgttgcttct |
3088980 |
T |
|
| Q |
201 |
tgggaacattgcaaggatatctctagttgtgtaaataagtgagcaccttttctcttccactttcaatttcagcaatctctttttgcctccaaatgttaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088981 |
tgggaacattgcaaggatatctctagttgtgtaaataagtgagcaccttttctcttccactttcaatttcagcaatctctttttgcctccaaatgttaat |
3089080 |
T |
|
| Q |
301 |
taatgtttagatttcttattttggatgtgcttgttttgaactaatcatgtagttgggctaaagagagcatacaaatagcgtgcaaatggggttatgaagg |
400 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3089081 |
taatgtttagatttct--ttttg---cttcttgttttgaactaatcatgtagttgggctaaagagagcatacaaatagcgtgcaaatggggttatgaagg |
3089175 |
T |
|
| Q |
401 |
agttaaatctggaatgactctatcaggtaactcaagtcacaaactataaattcaaccacttactgataggcgtttctttaaagcaaggtttt-aaaacct |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3089176 |
agttaaatctggaatgactctatcaggtaactcaagtcacaaactataaattcaaccacttactgataggcgtttctttaaagcaaggttttaaaaacct |
3089275 |
T |
|
| Q |
500 |
agtagaagatc |
510 |
Q |
| |
|
|||||||||| |
|
|
| T |
3089276 |
ggtagaagatc |
3089286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University