View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15226_high_2 (Length: 286)

Name: NF15226_high_2
Description: NF15226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15226_high_2
NF15226_high_2
[»] chr1 (4 HSPs)
chr1 (155-268)||(7334317-7334430)
chr1 (201-258)||(25061220-25061277)
chr1 (223-257)||(35536067-35536101)
chr1 (223-257)||(40229567-40229601)
[»] chr2 (3 HSPs)
chr2 (189-257)||(3853880-3853948)
chr2 (198-257)||(18511082-18511141)
chr2 (201-257)||(31562756-31562812)
[»] chr8 (5 HSPs)
chr8 (203-258)||(3619144-3619199)
chr8 (223-257)||(6399204-6399238)
chr8 (223-257)||(34342948-34342982)
chr8 (223-257)||(43550870-43550904)
chr8 (221-266)||(41408160-41408205)
[»] chr5 (2 HSPs)
chr5 (222-258)||(3747682-3747718)
chr5 (201-266)||(2694831-2694896)
[»] chr7 (3 HSPs)
chr7 (222-257)||(19095929-19095964)
chr7 (201-255)||(24770972-24771026)
chr7 (223-257)||(44967482-44967516)
[»] chr4 (3 HSPs)
chr4 (223-266)||(43772219-43772262)
chr4 (223-257)||(49136478-49136512)
chr4 (221-257)||(5025485-5025521)
[»] chr3 (3 HSPs)
chr3 (223-257)||(44224733-44224767)
chr3 (200-257)||(45423841-45423898)
chr3 (222-258)||(37698484-37698520)
[»] chr6 (2 HSPs)
chr6 (222-258)||(8401242-8401278)
chr6 (226-266)||(32140687-32140727)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 7334430 - 7334317
Alignment:
Q  155 attctttgaacaattgtcgttcgacataatcttagataaattcatgtaaaagtgattctcatcaacatatgttgtttggataattttaatcaaaattgat 254  Q
    |||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  7334430 attctttgaacaattgtcgttcgaaataatcttagataaattcgcgtaaaagtgattctcatcaacatatgttgtttggataatttcaatcaaaattgct 7334331  T
Q  255 tttatgtgtgtact 268  Q
    ||||||||||||||    
T  7334330 tttatgtgtgtact 7334317  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 25061277 - 25061220
Alignment:
Q  201 taaaagtgattctcatcaacatatgttgtttggataattttaatcaaaattgatttta 258  Q
    ||||||||||||| |||||   ||| |||||||||||||| |||||||||||||||||    
T  25061277 taaaagtgattcttatcaattgatgatgtttggataatttgaatcaaaattgatttta 25061220  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 35536101 - 35536067
Alignment:
Q  223 atgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||||||||||||| ||||||||||||||||    
T  35536101 atgttgtttggataatttgaatcaaaattgatttt 35536067  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 40229567 - 40229601
Alignment:
Q  223 atgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||||||||||||| ||||||||||||||||    
T  40229567 atgttgtttggataatttgaatcaaaattgatttt 40229601  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 3853948 - 3853880
Alignment:
Q  189 gataaattcatgtaaaagtgattctcatcaacatatgttgtttggataattttaatcaaaattgatttt 257  Q
    |||| |||||||||||| ||||||| |||||  ||||||||||||||| ||| ||||||||||| ||||    
T  3853948 gatacattcatgtaaaattgattcttatcaatctatgttgtttggatagtttgaatcaaaattgctttt 3853880  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 18511141 - 18511082
Alignment:
Q  198 atgtaaaagtgattctcatcaacatatgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||| ||||||| || ||   |||||||||||||||||| ||||||||||||||||    
T  18511141 atgtaaaaatgattcttataaagtgatgttgtttggataatttaaatcaaaattgatttt 18511082  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 31562756 - 31562812
Alignment:
Q  201 taaaagtgattctcatcaacatatgttgtttggataattttaatcaaaattgatttt 257  Q
    ||||||||||||| || |   ||| ||||||||||||||| ||||||||||||||||    
T  31562756 taaaagtgattcttatgagtttatattgtttggataatttgaatcaaaattgatttt 31562812  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 3619144 - 3619199
Alignment:
Q  203 aaagtgattctcatcaacatatgttgtttggataattttaatcaaaattgatttta 258  Q
    ||||||||||| |||||  ||||||||||||||| ||| |||||||||||||||||    
T  3619144 aaagtgattcttatcaatgtatgttgtttggatagtttgaatcaaaattgatttta 3619199  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 6399204 - 6399238
Alignment:
Q  223 atgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||||||||||||||||||||||||||||||    
T  6399204 atgttgtttggataattttaatcaaaattgatttt 6399238  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 34342948 - 34342982
Alignment:
Q  223 atgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||||||||||||| ||||||||||||||||    
T  34342948 atgttgtttggataatttgaatcaaaattgatttt 34342982  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 43550904 - 43550870
Alignment:
Q  223 atgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||||||||||||| ||||||||||||||||    
T  43550904 atgttgtttggataatttgaatcaaaattgatttt 43550870  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 41408205 - 41408160
Alignment:
Q  221 atatgttgtttggataattttaatcaaaattgattttatgtgtgta 266  Q
    |||||||||||| ||| ||| ||||||||||||||||| |||||||    
T  41408205 atatgttgtttgaatagtttaaatcaaaattgattttaggtgtgta 41408160  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 3747682 - 3747718
Alignment:
Q  222 tatgttgtttggataattttaatcaaaattgatttta 258  Q
    ||||||||||||||| |||||||||||||||||||||    
T  3747682 tatgttgtttggatagttttaatcaaaattgatttta 3747718  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 2694831 - 2694896
Alignment:
Q  201 taaaagtgattctcatcaacatatgttgtttggataattttaatcaaaattgattttatgtgtgta 266  Q
    ||||||||||||| |||||   ||| |||||| ||||||| ||||||||||||||||  |||||||    
T  2694831 taaaagtgattcttatcaattgatgatgtttgtataatttgaatcaaaattgattttgagtgtgta 2694896  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 19095964 - 19095929
Alignment:
Q  222 tatgttgtttggataattttaatcaaaattgatttt 257  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19095964 tatgttgtttggataatttgaatcaaaattgatttt 19095929  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 24770972 - 24771026
Alignment:
Q  201 taaaagtgattctcatcaacatatgttgtttggataattttaatcaaaattgatt 255  Q
    ||||||||||| | |||||  ||||||||||||||||||||  ||||||||||||    
T  24770972 taaaagtgatttttatcaatttatgttgtttggataatttttgtcaaaattgatt 24771026  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 44967482 - 44967516
Alignment:
Q  223 atgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||||||||||||| ||||||||||||||||    
T  44967482 atgttgtttggataatttgaatcaaaattgatttt 44967516  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 43772219 - 43772262
Alignment:
Q  223 atgttgtttggataattttaatcaaaattgattttatgtgtgta 266  Q
    |||||||||||||||| | ||||||||||||||||| |||||||    
T  43772219 atgttgtttggataatatgaatcaaaattgattttaagtgtgta 43772262  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 49136512 - 49136478
Alignment:
Q  223 atgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||||| ||||||||||||||||||||||||    
T  49136512 atgttgtttgaataattttaatcaaaattgatttt 49136478  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 5025521 - 5025485
Alignment:
Q  221 atatgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  5025521 atatgttgtttggatagtttgaatcaaaattgatttt 5025485  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 44224767 - 44224733
Alignment:
Q  223 atgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||||||||||||||| ||||||||||||||    
T  44224767 atgttgtttggataattttagtcaaaattgatttt 44224733  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 45423841 - 45423898
Alignment:
Q  200 gtaaaagtgattctcatcaacatatgttgtttggataattttaatcaaaattgatttt 257  Q
    |||||||||||||| |||||   ||||||||||||||  || ||||||||||||||||    
T  45423841 gtaaaagtgattcttatcaattcatgttgtttggatagcttgaatcaaaattgatttt 45423898  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 37698484 - 37698520
Alignment:
Q  222 tatgttgtttggataattttaatcaaaattgatttta 258  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  37698484 tatgttgtttggatagtttgaatcaaaattgatttta 37698520  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 8401242 - 8401278
Alignment:
Q  222 tatgttgtttggataattttaatcaaaattgatttta 258  Q
    |||| |||||||||||||| |||||||||||||||||    
T  8401242 tatgatgtttggataatttaaatcaaaattgatttta 8401278  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 32140727 - 32140687
Alignment:
Q  226 ttgtttggataattttaatcaaaattgattttatgtgtgta 266  Q
    ||||||||||||||| ||||||||||| |||| ||||||||    
T  32140727 ttgtttggataatttgaatcaaaattgcttttgtgtgtgta 32140687  T

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