View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15226_low_1 (Length: 617)
Name: NF15226_low_1
Description: NF15226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15226_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 280 - 561
Target Start/End: Complemental strand, 45082502 - 45082221
Alignment:
| Q |
280 |
actcaaaacgacagagattttggaataattagacagcgatgtaagctctataagcaaaatcaaagaatgagttaatgtaatgaaacccaccaaggaatag |
379 |
Q |
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| T |
45082502 |
actcaaaacgacagagattttggaataattagacagcgatgtaagctctataagcaaaatcaaagaatgagttaatgtaatgaaccccaccaaggaatag |
45082403 |
T |
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| Q |
380 |
tagaatgtcatacaacattaccactcacatactttgttcctgtaattgcttatacactttttattccctctcttttgaaaacccctttttcaagtaaact |
479 |
Q |
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| T |
45082402 |
tagaacgtcatacaacattaccactcacatactttgttcctgtaattgcttatacactttttattccctctcttttgaaaacccctttttcaagtaaact |
45082303 |
T |
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| Q |
480 |
cgtaaacaagtgcggtcttgctttcatgttgtaatgatgataattatttggaccattattgttgataagggggtgaatcttc |
561 |
Q |
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| T |
45082302 |
cgtaaacaagtgcggtcttgctttcatgttgtaatgatgataattgtttggaccattattgttgataagggggtgaatcttc |
45082221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 45082778 - 45082570
Alignment:
| Q |
5 |
gcaacaaattatagatagcgaggacaggtgtgagccttgtgtggccaagaatgttgaaaatgttattttcaaatgattattgaaaacttttcatattcag |
104 |
Q |
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| T |
45082778 |
gcaacaaattatagatagctagcacaggtgtgagccttgtgtggccaagaatgttgacaatgttattttcaaatgattattgaaaacttctcatattcag |
45082679 |
T |
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| Q |
105 |
cataaataaagccatttgtagtggtgacatggtcaactaatgtgtcaattcttaaatataactttttgtggttcaattccacacctattagatgatgcaa |
204 |
Q |
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| T |
45082678 |
cataaataaagccatttgtagtggtgacatggtcaactaatgtgtcaattcttgaatataactttttgtggttcaattccacacctattagatgatgtta |
45082579 |
T |
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| Q |
205 |
accgactac |
213 |
Q |
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| T |
45082578 |
accgactac |
45082570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 568 - 599
Target Start/End: Complemental strand, 45082203 - 45082172
Alignment:
| Q |
568 |
aaaaaggttgtccctaaagtttatcatttaca |
599 |
Q |
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| T |
45082203 |
aaaaaggttgtccctaaagtttatcatttaca |
45082172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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