View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15226_low_2 (Length: 570)
Name: NF15226_low_2
Description: NF15226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15226_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 309
Target Start/End: Original strand, 17655177 - 17655461
Alignment:
| Q |
11 |
caaaggtgtggggaaataaaaacagctcacttattttgattcaagatgtaaactccatctaattcaattgaaatcatgttaagctcaaccaannnnnnnn |
110 |
Q |
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| T |
17655177 |
caaaggtgtggggaaataaaaacagctcacttattttgattcaagatgtaaactccatctaattcaattgaaatcatgttaagctcaaccaatttttttt |
17655276 |
T |
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| Q |
111 |
nnnnattattattctttgacatataacttaatcaaaatataaaaatgtaatctaatcaaaccaaatgaatcaaatacaattaacttaatctataaaatct |
210 |
Q |
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| T |
17655277 |
ttttattattattctttgacatataacttaatcaaaatataaaaatgtaatctaatcaaaccaaat--------------taacttaatctataaaatct |
17655362 |
T |
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| Q |
211 |
ttcaaaaaataccaatttagacggtataaattctttagctttattatattactactgtgattatactatgattcattttaaagtttaagttacatcggc |
309 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17655363 |
ttcaaaaaataccaatttagacggtataaattttttagctttattatattactactgtgattatactatgattcattttaaagtttaagttacatcggc |
17655461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 397 - 554
Target Start/End: Original strand, 17655549 - 17655706
Alignment:
| Q |
397 |
gtaccaaataaaacaacaaaactccttattttgatggtattatgttggatttagacaccaatagggatattttgagtttaaatatctcaagttgatgtgt |
496 |
Q |
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| T |
17655549 |
gtaccaaataaaacaacaaaactccttattttgatggtattatgttggatttagacaccaatagggatattttgagtttaaacatctcaagttgatgtgt |
17655648 |
T |
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| Q |
497 |
ttgtattagaacaaagatttagctgttgatcggaaatatcaaaatattatgtcaaatg |
554 |
Q |
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| T |
17655649 |
ttgtattagaacaaagatttagctgtcgatcggaaatatcaaaatattatgtcaaatg |
17655706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 115 - 309
Target Start/End: Original strand, 17728792 - 17728985
Alignment:
| Q |
115 |
attattattctttgacatataacttaatcaaaatataaaaatgtaatctaatcaaaccaaatgaatcaaatacaattaacttaatctataaaatctttca |
214 |
Q |
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||||||||||||||||||| | ||| ||| |||||||||| |||||||||||||||| || ||| |||||| ||||||||||| |||| ||||||||||| |
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| T |
17728792 |
attattattctttgacatacagcttgatcgaaatataaaagtgtaatctaatcaaacgaa-tgagtcaaatgcaattaacttattctacaaaatctttca |
17728890 |
T |
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| Q |
215 |
aaaaataccaatttagacggtataaattctttagctttattatattactactgtgattatactatgattcattttaaagtttaagttacatcggc |
309 |
Q |
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| T |
17728891 |
aaaaataccagtttagacggtatacattttttagctttattatgttactactgtgattatactatcattcattttgaaatttaagttacatcggc |
17728985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 424 - 554
Target Start/End: Original strand, 17729126 - 17729256
Alignment:
| Q |
424 |
attttgatggtattatgttggatttagacaccaatagggatattttgagtttaaatatctcaagttgatgtgtttgtattagaacaaagatttagctgtt |
523 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17729126 |
attttgatggtattatgttgaatttagacatcaatagggatattttgagtttaaacatctcaagttgacgtgtttgtattagaacaaagatttagctgtc |
17729225 |
T |
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| Q |
524 |
gatcggaaatatcaaaatattatgtcaaatg |
554 |
Q |
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| T |
17729226 |
aatcggagatatcaaaatattatgtcaaatg |
17729256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 17710813 - 17710877
Alignment:
| Q |
12 |
aaaggtgtggggaaataaaaacagctcacttattttgattcaagatgtaaactccatctaattca |
76 |
Q |
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| T |
17710813 |
aaaggtgtggggaaataaaaacagctcacttattttgattcaagatgtaaactccatctaattca |
17710877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 504 - 554
Target Start/End: Original strand, 17729257 - 17729307
Alignment:
| Q |
504 |
agaacaaagatttagctgttgatcggaaatatcaaaatattatgtcaaatg |
554 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
17729257 |
agaacaaagatttagctgtcaatcggagatatcaaaatattatgtcaaatg |
17729307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 17728754 - 17728786
Alignment:
| Q |
11 |
caaaggtgtggggaaataaaaacagctcactta |
43 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
17728754 |
caaaggtgaggggaaataaaaacagctcactta |
17728786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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