View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15226_low_3 (Length: 521)
Name: NF15226_low_3
Description: NF15226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15226_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 16 - 505
Target Start/End: Original strand, 325283 - 325784
Alignment:
| Q |
16 |
tatcaactttacgaagagattggtcaaggcgttagtgcttccgttcatcgcgctctctgtgtttctttcaatgaaatcgtcgccatcaaaattctcgact |
115 |
Q |
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| T |
325283 |
tatcaactttacgaagagattggtcaaggcgttagtgcttccgttcatcgcgctctctgtgtttctttcaatgaaatcgtcgccatcaaaattctcgact |
325382 |
T |
|
| Q |
116 |
tcgaacgcgacaactgcgatctggtaccttattttttcattcatattaatattttaattctaaattgctttcgccacg------------ctgcaaactt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
325383 |
tcgaacgcgacaactgcgatctggtaccttattttttcattcatattaatattttaattctaaattgctttcgccacggttttagttacgctgcaaactt |
325482 |
T |
|
| Q |
204 |
ctacattgcctatgcatcgtgattttaaattgcgattgcagtcgatgcagtctcatgtgtttgtgaaaatctctaaaacctttattttatggtcataatt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325483 |
ctacattgcctatgcatcgtgattttaaattgcgattgcagtcgatgctgtctcatgtgtttgtgaaaatctctaaaacctttattttatggtcataatt |
325582 |
T |
|
| Q |
304 |
gccgttgcagaacacagtttagaataatgattaatatctttgtacacaagagattaatgatgttattttttcttctacataatttctgatgattaatggt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325583 |
gccgttgcagaacacagtttagaataatgattaatatctttgtacacaagagattaatgatgttattttttcttctacataatttctgatgattaatggt |
325682 |
T |
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| Q |
404 |
ttagttaattaataccaatcctcatcaatctttcataatttattcatagttttggctcctatgcattacaatttggctattttgacccctaataaaataa |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
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| T |
325683 |
ttagttaattaataccaatcctcatcaatctttcataatttattcatagttttggctcctatgcattacaattaggctattttgacccataacaaaataa |
325782 |
T |
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| Q |
504 |
at |
505 |
Q |
| |
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|| |
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| T |
325783 |
at |
325784 |
T |
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