View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15226_low_5 (Length: 397)
Name: NF15226_low_5
Description: NF15226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15226_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 6094282 - 6094660
Alignment:
| Q |
19 |
ctaccaacatgaacaatatgcatgtatagagttgtattcttataaaaatgatgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094282 |
ctaccaacatgaacaatatgcatgtatagagttgtattcttataaaaatgatgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtt |
6094381 |
T |
|
| Q |
119 |
tagacttgatttttaaattaagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6094382 |
tagacttgatttttaaattaagttatctaatatgaatttccctctacttgattcatctttataggaaaaccaaaatggacaattttgtgcatgagcttca |
6094481 |
T |
|
| Q |
219 |
ataaaggatatcaaaatctcacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa----------------- |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6094482 |
ataaaggatatcaaaatctcacaaaattcaatatagtctttctcatttgttttgaaatccaacattactaaaaaactacgaaaagaggtatgctagtacc |
6094581 |
T |
|
| Q |
301 |
-gatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattt |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094582 |
tgatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggattt |
6094660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 44188120 - 44188508
Alignment:
| Q |
19 |
ctaccaacatgaacaatatgcatgtatagagttgtattcttataaaaatga-tgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgt |
117 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44188120 |
ctaccaacatgaacaatatggatgtatagagtagtattcttataaaaatgactgtgtggccttcactctatgtgtcacattcgaaattcaatgcttttgt |
44188219 |
T |
|
| Q |
118 |
ttagacttgatttttaaattaagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44188220 |
ttagacttgatttttaaattaagttatctaatttgaatttccctctaattgattcatttttataggaaaaccaaaatggacaattttgtgcatgagcttc |
44188319 |
T |
|
| Q |
218 |
aataaaggatatcaaaatctcacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa---------------- |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44188320 |
aataaaggatatcaaaatctcacaaaattcaatatagtctttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtac |
44188419 |
T |
|
| Q |
301 |
--gatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttg |
387 |
Q |
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||||| ||||||||||| |||||| | ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44188420 |
ctgatgtattgatgcataaatcaaagcctattcacttcgcatagcagcaatttgtctgttcaacaattttgcttggatttgctcctttg |
44188508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 32727247 - 32727635
Alignment:
| Q |
19 |
ctaccaacatgaacaatatgcatgtatagagttgtattcttataaaaatga-tgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32727247 |
ctaccaacatgaacaatatgcatgtatagagtagtattcttataaaaatgactgtgtggccttcactctatgtgtcacattcgaaattcaatgcttttgt |
32727346 |
T |
|
| Q |
118 |
ttagacttgatttttaaattaagttatctaatatgaatttccctctacttgattcatttttataggaaaactaaaatggacaattttgtgcatgagcttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
32727347 |
ttagacttgatttttaaattaagttatctaatttgaatttccctctaattgattcatttttataggaaaaccaaaatggacaattttgtgcatgagcttc |
32727446 |
T |
|
| Q |
218 |
aataaaggatatcaaaatctcacaaaattcaatatagt-tttctcatttgtattgaaatccaacattactaaaaaactacgaaa---------------- |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32727447 |
aataaaggatatcaaaatctcacaaaattcaatatagtctttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtac |
32727546 |
T |
|
| Q |
301 |
--gatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttg |
387 |
Q |
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||||| ||||||||||| |||||| | ||| |||| ||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
32727547 |
ctgatgtattgatgcataaatcaaagcctattcacttcgcatagcagcaatttgtctgttaaacaattttgcttggatttgctcctttg |
32727635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 301 - 387
Target Start/End: Complemental strand, 43095660 - 43095574
Alignment:
| Q |
301 |
gatgtgttgatgcataagccaaagcattttctcttctcatagcagcaatttgtctggtcaacaattttgcttggatttgctcctttg |
387 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
43095660 |
gatgtgttgatgcataagccaaagccttttctcttctcatagcagcaatttgtctattcaacaatcttgcttggatttgctcctttg |
43095574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 43095724 - 43095684
Alignment:
| Q |
255 |
ttttctcatttgtattgaaatccaacattactaaaaaacta |
295 |
Q |
| |
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||||||||||||||||||||| || ||||||||||| |||| |
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| T |
43095724 |
ttttctcatttgtattgaaattcagcattactaaaatacta |
43095684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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