View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15226_low_6 (Length: 391)
Name: NF15226_low_6
Description: NF15226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15226_low_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 28 - 391
Target Start/End: Complemental strand, 35370873 - 35370509
Alignment:
| Q |
28 |
aagcatagggagcattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatag |
127 |
Q |
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| T |
35370873 |
aagcatagagaacattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatag |
35370774 |
T |
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| Q |
128 |
atggaattaaatgttgttaaatgtgttaagtggaccacatctggtgactcctttggtcttatcaatgaggtttcatatataacatctgtggatttatcta |
227 |
Q |
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| T |
35370773 |
atggaattaaatgttgttaaatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatataacatctgtggatttatcta |
35370674 |
T |
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| Q |
228 |
ccgtaccataaatgtagtcatacattggcataaaaagtgagtaatttctcctgaatttagtgtgatgtaatgagtgaaacctatggaaaccaagaagaaa |
327 |
Q |
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| T |
35370673 |
ccgtaccataaatgtagtcatacattggcataaaaagtgagtaatttctcctgaatttagtgtgatgtaatgagtgaaacctatggaaaccaagaagaaa |
35370574 |
T |
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| Q |
328 |
ataaattagtatatggtctttgcttgtagaagttatgaagttcattacaatatt-aacattgtaa |
391 |
Q |
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| T |
35370573 |
ataaattagtatatggactttgattgtagaagttatgaatttcattacaatattaaacattgtaa |
35370509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 40 - 391
Target Start/End: Complemental strand, 35381428 - 35381071
Alignment:
| Q |
40 |
cattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatagatggaattaaat |
139 |
Q |
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| T |
35381428 |
cattgtaaagggccacattaaatataggtaccatttagatgtttgaggattggaggctaatgaagtaaagcctaaacgtaattgatagatggaactaagt |
35381329 |
T |
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| Q |
140 |
gttgttaaatgtgttaagtggaccacatctggtgactcctttggtcttatcaatgaggtttcatatataacatctgtggatttatctaccgtaccataaa |
239 |
Q |
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| T |
35381328 |
gtagttaaatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggcttcatatgtagcatctgtggatttatctacggtgccataaa |
35381229 |
T |
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| Q |
240 |
tgtagtcatacattggcataaaaagtgagtaatttctcctgaatttagtgtgatgtaatgagtgaaacctatggaa----accaagaagaaaata---aa |
332 |
Q |
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| T |
35381228 |
tgtagtcatatataggcatgaagagtgagtaattagacctaaatttggtgtgatgcaatgagtgaaacctgtggaaatatatcaagaagaaaataattaa |
35381129 |
T |
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| Q |
333 |
ttagtatatggtctttgcttgtagaagttatgaagttcatt-acaatattaacattgtaa |
391 |
Q |
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|||| |||||| ||||| | |||| ||||||||||||| |||||| ||||||||||| |
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| T |
35381128 |
ttagcatatggactttgat--tagacactatgaagttcattaacaatagtaacattgtaa |
35381071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 28 - 316
Target Start/End: Complemental strand, 35355426 - 35355138
Alignment:
| Q |
28 |
aagcatagggagcattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatag |
127 |
Q |
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| T |
35355426 |
aagcatagagaacattgtaaatggccacattaagtgtagataccatttagatgtttgaggattggaagctaaggaagcaaagcctaaacgcatttgataa |
35355327 |
T |
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| Q |
128 |
atggaattaaatgttgttaaatgtgttaagtggaccacatctggtgactcctttggtcttatcaatgaggtttcatatataacatctgtggatttatcta |
227 |
Q |
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| T |
35355326 |
attgaatcaagtgtagttaaatgtgttaagtggaccacatctggtgactcctttggtctcatcaatgaggtttcatatgtagcatctgtggatttatgca |
35355227 |
T |
|
| Q |
228 |
ccgtaccataaatgtagtcatacattggcataaaaagtgagtaatttctcctgaatttagtgtgatgtaatgagtgaaacctatggaaa |
316 |
Q |
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| T |
35355226 |
ctgtaccataaatgtagtcatacattggcatgaaaagtgagtagttagccctgaatttggtgtgatgcagtgagtgaaacctgtggaaa |
35355138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 40 - 309
Target Start/End: Complemental strand, 19685406 - 19685137
Alignment:
| Q |
40 |
cattgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatagatggaattaaat |
139 |
Q |
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||||||||| ||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||| |||||||||| |||| ||||||||| || | |
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| T |
19685406 |
cattgtaaaaggccacattaaattgagataccatttcgatgtttgagggttggaggctaaggaagcaagccctaaacgtagttgaaagatggaatcaagt |
19685307 |
T |
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| Q |
140 |
gttgttaaatgtgttaagtggaccacatctggtgactcctttggtcttatcaatgaggtttcatatataacatctgtggatttatctaccgtaccataaa |
239 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| | |||| || | | | ||||||| || |||||| |||| |||| || |||||||||| |
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| T |
19685306 |
gttgttaaatgtgttaagtgcaccacatctggtgactcctcttgtctcttcgaacaagcttcatatgtagcatctgaggatgtatccacagtaccataaa |
19685207 |
T |
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| Q |
240 |
tgtagtcatacattggcataaaaagtgagtaatttctcctgaatttagtgtgatgtaatgagtgaaacct |
309 |
Q |
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| T |
19685206 |
tgtggtcatatataggcatgaagagtgagtaatttgacctaaattttgtgtgatgcagcgagtgaaacct |
19685137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 43 - 294
Target Start/End: Original strand, 19629248 - 19629499
Alignment:
| Q |
43 |
tgtaaagggccacattaaatgtaggtaccatttagatgtttgagggttggatgctaatgaagcaaagcctaaacgtaattgatagatggaattaaatgtt |
142 |
Q |
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| T |
19629248 |
tgtaaaaggccacattaaattgagataccatttagaagtttgagggttggaggctaaggaagcaaaccctaagcgtagttgaaagatagaatcaagtgtt |
19629347 |
T |
|
| Q |
143 |
gttaaatgtgttaagtggaccacatctggtgactcctttggtcttatcaatgaggtttcatatataacatctgtggatttatctaccgtaccataaatgt |
242 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||| | |||| |||| | | ||||||| || ||||||||||| ||| || ||||||||||||| |
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| T |
19629348 |
gttaaatgtgttaagtgcaccacatctggtgattcctcttgtctcttcaaacaagattcatatgtagcatctgtggatgcatccactgtaccataaatgt |
19629447 |
T |
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| Q |
243 |
agtcatacattggcataaaaagtgagtaatttctcctgaatttagtgtgatg |
294 |
Q |
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| T |
19629448 |
agtcatatataggcatgaagagtgagtaatttgacctaaattttgtgtgatg |
19629499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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