View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15227_low_1 (Length: 567)
Name: NF15227_low_1
Description: NF15227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15227_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 60 - 552
Target Start/End: Original strand, 36363871 - 36364360
Alignment:
| Q |
60 |
gatcatctacctcaatttttgttggtgattcttctgttccaccagctgcacatacacaatcactttaaaagtgttcctaatattgatatttttcttagaa |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
36363871 |
gatcatctacctcaatttttgttggtgattcttctgttccaccagctgcacatacacaatcacttttaaggtattcctaatattgatatttttcttagaa |
36363970 |
T |
|
| Q |
160 |
agtttaagtagatattttacgatatatatacaatggcaagttcataaatttttcaaatatacgaacaatgataattaaacactcttaaatcctcaacatc |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
36363971 |
agtttaagtagatattttacgatatatatacaatggcaagttcataaatttttcaaatatatgaacaatgataattaaacactcttaaatcctcaagatc |
36364070 |
T |
|
| Q |
260 |
aattggacacctcatgtcatctctgnnnnnnnnccttcttattatcacatcacatactctaattctcaaatttattttctcttagtgtgtttaaagagtg |
359 |
Q |
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|| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36364071 |
aactggacacctcatttcatctctg-tttttttccttcttattatcacatcacatactctaattctcaaatttattttctcttagtgtgtttaaagagtg |
36364169 |
T |
|
| Q |
360 |
tatatattagtgttgaccaaacattttcccttttcataatctg---nnnnnnnnnnttataacatatgcatnnnnnnnntcttatatagcaattttacat |
456 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
36364170 |
tatatattagtgttg-----acattttcccttttcataatctgaaaaaaaaaataattataacatatgcataaaaaagatcttttatagcaattttacat |
36364264 |
T |
|
| Q |
457 |
tcattttctttaaaatatgtatgtaaaaactattctttttctataaataaggagttcgatgtcatgtgctcaaacccagacaaatgaggaaatatt |
552 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36364265 |
tcattttctttaaaatatgtatgtaaaaactattgtttttctataaataaggagttcaatgtcatgtgctcaaacccagacaaatgaggaaatatt |
36364360 |
T |
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