View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15227_low_2 (Length: 274)

Name: NF15227_low_2
Description: NF15227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15227_low_2
NF15227_low_2
[»] chr8 (4 HSPs)
chr8 (44-206)||(9493041-9493203)
chr8 (42-232)||(16436182-16436370)
chr8 (51-232)||(19302658-19302838)
chr8 (49-113)||(35428323-35428387)
[»] chr4 (10 HSPs)
chr4 (44-255)||(7103374-7103584)
chr4 (42-221)||(40756863-40757041)
chr4 (44-221)||(9748025-9748201)
chr4 (42-232)||(11423231-11423421)
chr4 (44-221)||(9745856-9746033)
chr4 (53-151)||(9742373-9742470)
chr4 (46-92)||(44527137-44527183)
chr4 (44-89)||(9742331-9742376)
chr4 (170-231)||(25361287-25361348)
chr4 (184-232)||(19246860-19246908)
[»] chr7 (4 HSPs)
chr7 (43-255)||(11791013-11791224)
chr7 (48-232)||(14069412-14069595)
chr7 (48-232)||(14379440-14379623)
chr7 (42-121)||(9112304-9112382)
[»] scaffold0524 (1 HSPs)
scaffold0524 (42-255)||(10311-10523)
[»] chr3 (2 HSPs)
chr3 (46-232)||(9491350-9491539)
chr3 (41-139)||(8085494-8085592)
[»] chr2 (4 HSPs)
chr2 (45-178)||(26024308-26024440)
chr2 (48-217)||(27727172-27727334)
chr2 (52-112)||(35025324-35025384)
chr2 (49-94)||(5953769-5953814)
[»] chr5 (3 HSPs)
chr5 (45-219)||(16054696-16054866)
chr5 (42-123)||(27214500-27214581)
chr5 (56-101)||(15908494-15908539)
[»] chr6 (1 HSPs)
chr6 (44-125)||(30269454-30269534)
[»] scaffold0008 (1 HSPs)
scaffold0008 (167-231)||(4394-4458)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 9493041 - 9493203
Alignment:
Q  44 tcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcct 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  9493041 tcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggctaaaacatggactataaatatcctcatcgacgtcaatgatattttcct 9493140  T
Q  144 ccaaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagagg 206  Q
    | |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  9493141 ctaaccacttattaaaaggaatgtacctggaatcatgcgaattaaatatcacatctaaagagg 9493203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 16436182 - 16436370
Alignment:
Q  42 agtcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttc 141  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||  ||||||||| |||    
T  16436182 agtcccctcaaaacatttcttatttctagcacaccatatcttataacacaaggccaaaatatggactat-aatatcttcatcgacaacaataatatcttc 16436280  T
Q  142 ctccaaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgaccaa 232  Q
    | |||||||||||| |||| ||| |||  | ||||||||| ||||||||| |||| ||||||| ||| ||||||||| ||  |||||||||    
T  16436281 caccaaccacttatgaaaatgaacgtatct-gaatcatgcgaattaaataccacacctaaagaagaagcaaaccatacctactttgaccaa 16436370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 19302838 - 19302658
Alignment:
Q  51 aaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcctccaacca 150  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  || || | | |||| |||||||||||    
T  19302838 aaaacatttcttattactagcacaccatatctcataacacaaggccaaaacatggactat-aatatcctcattaacatctacagtattatcctccaacca 19302740  T
Q  151 cttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgaccaa 232  Q
    |||||||||||||| |||  |  |||||| | ||||||||| ||||  | |||||||| |||||||||| || |||||||||    
T  19302739 cttattaaaaggaacgtatctaaaatcatacgaattaaataccacacttgaagaggaagcaaaccatatatgctttgaccaa 19302658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 35428323 - 35428387
Alignment:
Q  49 tcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaa 113  Q
    ||||||||||| |||||||||||||  ||||| |||||| ||| || ||| |||| |||||||||    
T  35428323 tcaaaacattttttatttctagcacgtcatatttcataaaacagggtcaacacattgactataaa 35428387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 44 - 255
Target Start/End: Complemental strand, 7103584 - 7103374
Alignment:
Q  44 tcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcct 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||    
T  7103584 tcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccagaacatgggctataa-tatcctcatcgacatcaataatattttcct 7103486  T
Q  144 ccaaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgaccaa-gacactccat 242  Q
      |||||||||| ||||||||  ||| |||| |||||  ||||||||| |||| ||||||||||| ||||||||||||| ||||||||| |||||||||     
T  7103485 ttaaccacttatgaaaaggaacatacctggactcatgtgaattaaataccacacctaaagaggaagcaaaccatatctgctttgaccaatgacactcca- 7103387  T
Q  243 ttaagaggtgtga 255  Q
    | |||||||||||    
T  7103386 taaagaggtgtga 7103374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 40756863 - 40757041
Alignment:
Q  42 agtcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttc 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  40756863 agtcccctcaaaacatttcttatttctagcacaccatatctcatagcacaaggccaaaacatggactat-aatatcctcatcgacatcaataatattttc 40756961  T
Q  142 ctccaaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatct 221  Q
    |||||||||||||| |||||||| |||| ||||||||||| ||||||||| ||   |||||| |||| |||| |||||||    
T  40756962 ctccaaccacttatgaaaaggaacgtacctggaatcatgcgaattaaataccatgcctaaagtggaagcaaatcatatct 40757041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 9748025 - 9748201
Alignment:
Q  44 tcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcct 143  Q
    |||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||| ||||||||||||| | ||||||||||||| ||    
T  9748025 tcccttcaaaacatttcttatttctagcacaccatacctaataacgcaaggccaaaacatggattat-aatatcctcatcggcatcaataatatttttct 9748123  T
Q  144 ccaaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatct 221  Q
    ||||||||   | |||||| |  ||| || || ||||||||||||||| ||||  |||||||||| ||||||||||||    
T  9748124 ccaaccacacctgaaaaggtacatacatgaaaacatgcaaattaaataccacacataaagaggaagcaaaccatatct 9748201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 11423231 - 11423421
Alignment:
Q  42 agtcccctcaaaacatttctt-atttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatatttt 140  Q
    |||||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||| |  | ||||||||||||     
T  11423231 agtcccctcaaaacatttttttatttctagcacaacatatatcataacacaaggccaaaacatgaacaat-aatatcctcaccagcatcaataatatttc 11423329  T
Q  141 cctccaaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgaccaa 232  Q
     |||||||||||    |||||| | |||| ||| ||||||||  |||||||  ||  ||||||||||| ||||||||||||| |||||||||    
T  11423330 tctccaaccactccgaaaaaggtacgtacttgggatcatgcatgttaaatacaacgactaaagaggaagcaaaccatatctgctttgaccaa 11423421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 9745856 - 9746033
Alignment:
Q  44 tcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaat-aatattttcc 142  Q
    |||| ||||| ||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||| ||||||||||| |   ||||| |||||||| |    
T  9745856 tcccttcaaatcatttcttatttctagcactccataactaataacgcaaggccaaaatatggactat-aatatcctcattgggatcaataaatatttttc 9745954  T
Q  143 tccaaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatct 221  Q
    |||||| ||     |||||| | |||| |  |||||||| ||||||||| |||||||| ||||||| ||||||||||||    
T  9745955 tccaactacagccgaaaaggtacgtacataaaatcatgcgaattaaataccacatctatagaggaagcaaaccatatct 9746033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 9742373 - 9742470
Alignment:
Q  53 aacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcctccaaccac 151  Q
    ||||||||||||||||||||||||||| || ||||| ||||||||||||||  ||||| |||||| |||||| | |||||||| |||| ||||| ||||    
T  9742373 aacatttcttatttctagcacaccatacctaataacgcaaggccaaaacattaactat-aatatcttcatcggcatcaataatttttttctccacccac 9742470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 44527183 - 44527137
Alignment:
Q  46 ccctcaaaacatttcttatttctagcacaccatatctcataacacaa 92  Q
    ||||||||| ||||||||||| |||| |||||||| |||||||||||    
T  44527183 ccctcaaaatatttcttatttatagcgcaccatatttcataacacaa 44527137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 9742331 - 9742376
Alignment:
Q  44 tcccctcaaaacatttcttatttctagcacaccatatctcataaca 89  Q
    |||| ||||||||||||||||||||||||| ||||| || ||||||    
T  9742331 tcccttcaaaacatttcttatttctagcactccatacctaataaca 9742376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 25361348 - 25361287
Alignment:
Q  170 gtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgacca 231  Q
    |||||||||||| | ||||||| |||| ||||||||||| |||| ||||| || ||||||||    
T  25361348 gtggaatcatgcgagttaaataccacacctaaagaggaagcaaatcatatttgctttgacca 25361287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 19246908 - 19246860
Alignment:
Q  184 attaaatatcacatctaaagaggaaacaaaccatatctgttttgaccaa 232  Q
    |||||||| || | ||||||||||| ||||||||||||| |||||||||    
T  19246908 attaaataccaaacctaaagaggaagcaaaccatatctgctttgaccaa 19246860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 43 - 255
Target Start/End: Original strand, 11791013 - 11791224
Alignment:
Q  43 gtcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcc 142  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  11791013 gtcccctcaaagcatttcttatttctagcacaccatatctcataacataaggccaaaacatggactat-aatattctcatcgacatcaataatattttcc 11791111  T
Q  143 tccaaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgaccaa-gacactcca 241  Q
    ||||||||||||| ||||||||  ||| ||||||||||  |||| |||  |||| ||||||||||| |||||||| |||| ||||||||| |||||||||    
T  11791112 tccaaccacttatgaaaaggaacatacctggaatcatgtgaatttaatgccacacctaaagaggaagcaaaccatgtctgctttgaccaatgacactcca 11791211  T
Q  242 tttaagaggtgtga 255  Q
     | |||||||||||    
T  11791212 -taaagaggtgtga 11791224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 14069412 - 14069595
Alignment:
Q  48 ctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcctccaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||    
T  14069412 ctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactat-aatatcctcgtcggcatcaataatattttcctccaa 14069510  T
Q  148 ccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgaccaa 232  Q
    |||||||| |||||| | |||| || |||||||  || ||||||||||| ||||||||||| ||||||||||||  |||||||||    
T  14069511 ccacttatgaaaaggtacgtacctgaaatcatgtgaaataaatatcacacctaaagaggaagcaaaccatatcttctttgaccaa 14069595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 14379440 - 14379623
Alignment:
Q  48 ctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcctccaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||    
T  14379440 ctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactat-aatatcctcgtcggcatcaataatattttcctccaa 14379538  T
Q  148 ccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgaccaa 232  Q
    |||||||| |||||| | |||| || |||||||  || ||||||||||| ||||||||||| ||||||||||||  |||||||||    
T  14379539 ccacttatgaaaaggtacgtacctgaaatcatgtgaaataaatatcacacctaaagaggaagcaaaccatatcttctttgaccaa 14379623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 9112304 - 9112382
Alignment:
Q  42 agtcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctca 121  Q
    ||||||||||||| |||| ||||||||||  || ||||| ||||||||| ||||||| ||||  ||||| ||||||||||    
T  9112304 agtcccctcaaaatattttttatttctagtgcatcatatttcataacactaggccaacacattaactat-aatatcctca 9112382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 42 - 255
Target Start/End: Original strand, 10311 - 10523
Alignment:
Q  42 agtcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttc 141  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||  ||||||||| ||||||| ||||||||||||| ||||||||||||||    
T  10311 agtcccctcaaaacatttcttatttctagaacaccatatctcataagacaagaacaaaacatgaactataa-tatcctcatcgacatcaataatattttc 10409  T
Q  142 ctccaaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgaccaa-gacactcc 240  Q
    |||||||||| ||| |||||||| |||| | |||||||||| |||||||| |||| ||||||||||| ||||||||||||  ||| ||||| ||||||||    
T  10410 ctccaaccacgtatgaaaaggaacgtacctagaatcatgcacattaaataccacacctaaagaggaagcaaaccatatcttctttaaccaatgacactcc 10509  T
Q  241 atttaagaggtgtga 255  Q
    | | |||||||||||    
T  10510 a-taaagaggtgtga 10523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 46 - 232
Target Start/End: Original strand, 9491350 - 9491539
Alignment:
Q  46 ccctcaaaacatttcttatttctagcacacc----atatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttc 141  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||||| | || || |||||| |||||      
T  9491350 ccctcaaaacatttcttatttctagcacaccggccatatctcataacacaaggccaaaacatggactataa-tatccacctcaacatcaatattatttct 9491448  T
Q  142 ctccaaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgaccaa 232  Q
    |||||| ||||||  |||||| | |||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||||    
T  9491449 ctccaatcacttaagaaaaggtacgtacttggaatcatgcgaattaaatatcacatctaaagtggaagcaaaccatatctgctttgaccaa 9491539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 8085592 - 8085494
Alignment:
Q  41 tagtcccctcaaaacatttctt-atttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattt 139  Q
    |||| ||||||| |||||| || ||||||||  ||||| || ||||||||||||||||| ||||  ||||| |||||||||||  || ||||||||||||    
T  8085592 tagttccctcaatacatttttttatttctagtgcaccacatttcataacacaaggccaacacattaactat-aatatcctcatttacatcaataatattt 8085494  T

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Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 26024440 - 26024308
Alignment:
Q  45 cccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcctc 144  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  26024440 cccctcaaaacatttcttatttctagcacaccatatctcgtaacacaaggccaaaacatggactat-aatatcctcatcgacatcaataatattttcctc 26024342  T
Q  145 caaccacttattaaaaggaatgtacgtggaatca 178  Q
    ||||||||||  |||||| | |||| ||||||||    
T  26024341 caaccacttacgaaaaggtacgtacctggaatca 26024308  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 217
Target Start/End: Original strand, 27727172 - 27727334
Alignment:
Q  48 ctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcctccaa 147  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||       | |||| ||||| || ||||||||||||  ||||||    
T  27727172 ctcaaaacatttcttatttctagcacaacatatttcattacacaaggccaaaacatg-------actatcttcatcaacatcaataatatttctctccaa 27727264  T
Q  148 ccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccat 217  Q
    ||| |  | |||||| | |||| ||||||||||  ||||||||||||||  ||||||||||  |||||||    
T  27727265 ccattcttgaaaaggtacgtacctggaatcatgtgaattaaatatcacacgtaaagaggaagaaaaccat 27727334  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 35025324 - 35025384
Alignment:
Q  52 aaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataa 112  Q
    |||||||||||||||||| |||||||||| |||||| |||  ||||||| |||||||||||    
T  35025324 aaacatttcttatttctaacacaccatatttcataaaacagagccaaaatatggactataa 35025384  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 5953769 - 5953814
Alignment:
Q  49 tcaaaacatttcttatttctagcacaccatatctcataacacaagg 94  Q
    ||||||||||||||||||||||||| ||| |  |||||||||||||    
T  5953769 tcaaaacatttcttatttctagcactccagacttcataacacaagg 5953814  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 16054866 - 16054696
Alignment:
Q  45 cccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcgacgtcaataatattttcctc 144  Q
    ||||||||||||||||||||||||||||| | |||| || |||| |||||||| |||||||||||| ||||||||||   || ||||||||||||  |||    
T  16054866 cccctcaaaacatttcttatttctagcacgctatatttcgtaacgcaaggccagaacatggactat-aatatcctca---acatcaataatatttctctc 16054771  T
Q  145 caaccacttattaaaaggaatgtacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatat 219  Q
     |||||||  | |||||| | |||| |  |||||| | |||||||||||| | ||||||| |||  |||||||||    
T  16054770 aaaccactcctaaaaaggtacgtacctaaaatcatacgaattaaatatcatacctaaagatgaagtaaaccatat 16054696  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 27214500 - 27214581
Alignment:
Q  42 agtcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacat-ggactataaatatcctcatc 123  Q
    ||||||||||||| ||||||||||||||||||| || || |||||||||| || |||||||| | ||||| ||||||||||||    
T  27214500 agtcccctcaaaatatttcttatttctagcacatcaaatttcataacacagggacaaaacatagaactat-aatatcctcatc 27214581  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 15908494 - 15908539
Alignment:
Q  56 atttcttatttctagcacaccatatctcataacacaaggccaaaac 101  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||    
T  15908494 atttcttatttctagcacactatatttcataacacaaggccaaaac 15908539  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 30269534 - 30269454
Alignment:
Q  44 tcccctcaaaacatttcttatttctagcacaccatatctcataacacaaggccaaaacatggactataaatatcctcatcga 125  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||| | ||| | ||||||||||||    
T  30269534 tcccctcaaaacatttattatttctagcgcaacatatctcataacacaaggtcaaaacatgaagtat-actatcctcatcga 30269454  T

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Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 4458 - 4394
Alignment:
Q  167 tacgtggaatcatgcaaattaaatatcacatctaaagaggaaacaaaccatatctgttttgacca 231  Q
    ||||||||||||||| | |||||||||| | |||||||||||||||| |||||||| ||||||||    
T  4458 tacgtggaatcatgcgagttaaatatcatacctaaagaggaaacaaatcatatctgctttgacca 4394  T

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