View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_high_12 (Length: 357)
Name: NF15228_high_12
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 100 - 342
Target Start/End: Original strand, 38478081 - 38478323
Alignment:
| Q |
100 |
gttgaatcagatcggaaaaagcatttacatggatgaaatcaaagctctaatcaaccacaaacgccgccgcttaatcgtcaacatctctgatctccacaac |
199 |
Q |
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| T |
38478081 |
gttgaatcagatcggaaaaagcatttacatggatgaaatcaaagctctaatcaaccacaaacgccgccgcttaatcgtcaacatctctgatctccacaac |
38478180 |
T |
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| Q |
200 |
ttccgcgacttaggaaacaggttcttaaccgcttttacctttactgtttccactgtagaattcgattttgtttaaattctaagagatttttgcgtttttc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38478181 |
ttccgcgacttaggaaacaggttcttaaccgcttttacctttactgtttccactgtagaattcgattttgtttaaattctaagagatttttgcgtttttc |
38478280 |
T |
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| Q |
300 |
aggattttgagaaatccgagtgagtatatacaatcattctgtg |
342 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38478281 |
aggattttgagaaatccgagtgagtatatgcaatcattctgtg |
38478323 |
T |
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