View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_high_14 (Length: 331)
Name: NF15228_high_14
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 5249657 - 5249793
Alignment:
| Q |
13 |
aatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5249657 |
aatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagc |
5249756 |
T |
|
| Q |
113 |
tccttcccactatgccttggaattctctcatggtatg |
149 |
Q |
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| T |
5249757 |
tccttcccactatgccttggaattctctcatggtatg |
5249793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 5268892 - 5269028
Alignment:
| Q |
13 |
aatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagc |
112 |
Q |
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|||||||| ||||||| || || ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| | |
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| T |
5268892 |
aatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaac |
5268991 |
T |
|
| Q |
113 |
tccttcccactatgccttggaattctctcatggtatg |
149 |
Q |
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| T |
5268992 |
tccttcccactatgcctttcaattctctcatggtatg |
5269028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 5249857 - 5249946
Alignment:
| Q |
228 |
aatgattcaatcagcattgtttcaatggaataaatatattaagtttatgttttctatttttgaattacaggataggatgatgatggagat |
317 |
Q |
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| T |
5249857 |
aatgattcaatcagcattgtttcaatggaataaatatattaagtttatgttttatatttttgaattacaggataggatgatgatggagat |
5249946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 5276859 - 5276726
Alignment:
| Q |
16 |
attgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctcc |
115 |
Q |
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|||||| | |||||||||||||| ||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
5276859 |
attgttattgtttttgattttgacaaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactcc |
5276760 |
T |
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| Q |
116 |
ttcccactatgccttggaattctctcatggtatg |
149 |
Q |
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|||| || ||||||||||||||| | |||||||| |
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| T |
5276759 |
ttcctacaatgccttggaattctgttatggtatg |
5276726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 5272891 - 5272755
Alignment:
| Q |
13 |
aatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagc |
112 |
Q |
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||||||||| | ||||||| ||||| |||||||| ||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||||||| |
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| T |
5272891 |
aatattgttattatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagc |
5272792 |
T |
|
| Q |
113 |
tccttcccactatgccttggaattctctcatggtatg |
149 |
Q |
| |
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|||||||||| |||||||||||||| |||||||||| |
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| T |
5272791 |
tccttcccacaatgccttggaattccgtcatggtatg |
5272755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 43110964 - 43110830
Alignment:
| Q |
13 |
aatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagc |
112 |
Q |
| |
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||||||||||| |||||||| ||||| ||||||||| |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| | | |
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| T |
43110964 |
aatattgttgtggtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaac |
43110865 |
T |
|
| Q |
113 |
tccttcccactatgccttggaattctctcatggta |
147 |
Q |
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| ||||||| ||||| ||||| |||||||||| |
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| T |
43110864 |
ttgttcccaccatgccatggaacaatctcatggta |
43110830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 26315854 - 26315722
Alignment:
| Q |
15 |
tattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctc |
114 |
Q |
| |
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|||||| || ||||| || ||||| |||||||| ||||| |||||||| ||||| |||||| |||||||||| ||||||| ||||||||||||||| ||| |
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| T |
26315854 |
tattgtagtggttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactc |
26315755 |
T |
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| Q |
115 |
cttcccactatgccttggaattctctcatggta |
147 |
Q |
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||||||| ||||| | ||| | |||||||||| |
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| T |
26315754 |
tttcccaccatgccattgaactatctcatggta |
26315722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 43105463 - 43105366
Alignment:
| Q |
49 |
attgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccactatgccttggaattctctcatggt |
146 |
Q |
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||||| ||||| ||||||||||||||| ||||||| || ||||| ||||| ||| ||||||| ||||| | |||| ||||||| |||||||||| |
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| T |
43105463 |
attgaatgtgatagtgataattgggttcttgatgagtttggtttaactgagaaattctatcagcttcttcctagcatgctttggaatcctctcatggt |
43105366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 19569148 - 19569243
Alignment:
| Q |
35 |
ttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccactatgcctt |
130 |
Q |
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||||||||||| ||||||||||||| ||||||||||||| | |||||||||| ||||||| |||||||||||||| ||||||| |||||||||| |
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| T |
19569148 |
ttgataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctt |
19569243 |
T |
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