View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15228_high_22 (Length: 264)

Name: NF15228_high_22
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15228_high_22
NF15228_high_22
[»] chr1 (2 HSPs)
chr1 (19-253)||(10190789-10191023)
chr1 (19-234)||(10187849-10188064)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 10191023 - 10190789
Alignment:
Q  19 aagtggcataccaagtatacaaccagctgtttcaggatgtgtaggaccaaatttattcacaacaccaatagcatataaaattgaaaaataaaaacacttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10191023 aagtggcataccaagtatacaaccagctgtttcaggatgtgtaggaccaaatttattaacaacaccaatagcatataaaattgaaaaataaaaacacttg 10190924  T
Q  119 gttgaattttttggagcaatagtactaagctgagtagtaactttgaaaccagcatcagtacaaataccacagctagtttcagaactcaaatcaccattac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10190923 gttgaattttttggagcaatagtactaagctgagtagtaactttgaaaccagcatcagtacaaataccacagctagtttcagaactcaaatcaccattac 10190824  T
Q  219 aagcagtgtctaaaggacttaagataccaaccttt 253  Q
    |||||||||||||||||||||||||||||||||||    
T  10190823 aagcagtgtctaaaggacttaagataccaaccttt 10190789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 10188064 - 10187849
Alignment:
Q  19 aagtggcataccaagtatacaaccagctgtttcaggatgtgtaggaccaaatttattcacaacaccaatagcatataaaattgaaaaataaaaacacttg 118  Q
    |||||| |||||||||||||||| |||||   |||||| |||||||||||| | |||||||| ||||||||||||||||| ||||||  |||| |||||     
T  10188064 aagtgggataccaagtatacaactagctgcagcaggatctgtaggaccaaaatgattcacaataccaatagcatataaaactgaaaagaaaaagcactta 10187965  T
Q  119 gttgaattttttggagcaatagtactaagctgagtagtaactttgaaaccagcatcagtacaaataccacagctagtttcagaactcaaatcaccattac 218  Q
    |||| |||||||||| ||||| |  ||||||||| ||| |||||||||||||||||||| || || |  || || || || ||  |||||||||| ||||    
T  10187964 gttgcattttttggatcaatacttgtaagctgagaagtgactttgaaaccagcatcagtgcacatgctgcaactggtgtccgatttcaaatcacctttac 10187865  T
Q  219 aagcagtgtctaaagg 234  Q
    ||| ||||||||||||    
T  10187864 aagaagtgtctaaagg 10187849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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