View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_high_25 (Length: 249)
Name: NF15228_high_25
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42313880 - 42314116
Alignment:
| Q |
1 |
cctacaaagtgtgttggaaaggtggctgctcagatgcagatgtcttagctggttttgaagctgccataagtgacggtggtgatgtgctctcagtttctct |
100 |
Q |
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| T |
42313880 |
cctacaaagtgtgttggaaaggtggctgctcagatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagtttctct |
42313979 |
T |
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| Q |
101 |
tggtatgaagactcataacctttttacagattcaatatctacaggttcctttcatgcagtagcaaatggtatagtagtagttgcttctgctggaaattct |
200 |
Q |
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| T |
42313980 |
tggtatgaagactcataacctttttacagattcaatatctataggttcctttcatgcagtagcaaatggtatagtagtagttgcttctgctggaaattct |
42314079 |
T |
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| Q |
201 |
ggtccttattttggaactgtttcgaacgtggcacctt |
237 |
Q |
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| T |
42314080 |
ggtccttattttggaactgtttcgaacgtggcacctt |
42314116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 23040693 - 23040754
Alignment:
| Q |
33 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtggtgatgtgctctcagt |
94 |
Q |
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| T |
23040693 |
gatgcagatattttggctggttttgaagctgcaataagtgatggtgttgatgtactttcagt |
23040754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 42734729 - 42734790
Alignment:
| Q |
33 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtggtgatgtgctctcagt |
94 |
Q |
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| T |
42734729 |
gatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagt |
42734790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 42762750 - 42762710
Alignment:
| Q |
48 |
gctggttttgaagctgccataagtgacggtggtgatgtgct |
88 |
Q |
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| T |
42762750 |
gctggttttgaagctgccataagtgatggtgttgatgtgct |
42762710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 42717156 - 42717111
Alignment:
| Q |
33 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtg |
78 |
Q |
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| T |
42717156 |
gatgcagatattttggctggttttgaagctgccataagtgatggtg |
42717111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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