View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_high_26 (Length: 242)
Name: NF15228_high_26
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_high_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 42313553 - 42313777
Alignment:
| Q |
18 |
gatcagagacaaggagagtctcatacttaatagagagatgtgcggagtattctccataccaataaaatccgggctatatttcacatccaaccataattct |
117 |
Q |
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| T |
42313553 |
gatcagagacaaggagagtctcatacttaatagagagatgtgcggagtattctccataccaataaaatccgggctatatttcacatccaaccataattct |
42313652 |
T |
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| Q |
118 |
ttctaactgttccacaagcaggaagctaattggagcaagagctttctacaaaggttatgaggcatatgtaggcaaacttgatgcatcattttacactgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313653 |
ttctaactgttccacaagcaggaagctaattggagcaagagctttctacaaaggttatgaggcatatgtaggcaaacttgatgcatcattttacactgca |
42313752 |
T |
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| Q |
218 |
cgtgacacaataggccatggttctc |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
42313753 |
cgtgacacaataggccatggttctc |
42313777 |
T |
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