View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_high_5 (Length: 474)
Name: NF15228_high_5
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Original strand, 38039548 - 38039985
Alignment:
| Q |
13 |
cataggtgcaaatgtaaagattgaaatcagaagcaaaagaaatgaggagggcatgcaggaaaatattaaggtcagtgccttgcactagcaggagaaatga |
112 |
Q |
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| T |
38039548 |
cataggtgcaaatgtaaagattgaaatcagaagcaaaagaaatgaggagggcatgcaggaaaatattaaggtcagtgccttgcacgagcaggagaaatga |
38039647 |
T |
|
| Q |
113 |
gtctaggaaggacatggaggaaattctaaggtctaagctttctactatcattgaagaacctgaattgtgtgaagagaatctaacatcaccaccaagacac |
212 |
Q |
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| T |
38039648 |
gtctaggaaggacatggaggaaattctaagggctaagctttctactatcattgaagaacctgaattgtgtgaagagaatctaacatcaccaccaagacac |
38039747 |
T |
|
| Q |
213 |
atgatgaggatttcaaagaagcaagggaaaaagaataaagcaggacgatgtttagtaccccatgttaatctaaagcaatcttatattctctttattaatg |
312 |
Q |
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| T |
38039748 |
atgatgaggatttcaaagaagcaagggaaaaagaataaagcaggacgatgtttagtaccccatgttaatctaaagcaatcttatattctctttattaatg |
38039847 |
T |
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| Q |
313 |
gttttgcttcaaaaagcaactttgctgggtttcttcaacgctaacctcatcaaccttcatactttatcttgacagggccaatttcaatttttatgatgta |
412 |
Q |
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| T |
38039848 |
gctttgcttcaaaaagcaactttgctgggtttcttcaacgctaacctcatcaaccttcatactttatcttgacagggccaatttcaatttttatgatgta |
38039947 |
T |
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| Q |
413 |
atgataacggtgtttgtgtttgtaatccttaactattt |
450 |
Q |
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| T |
38039948 |
atgataacggtgtttgtgtgtgtaatccttaactattt |
38039985 |
T |
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