View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_high_8 (Length: 444)
Name: NF15228_high_8
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 6037122 - 6037546
Alignment:
| Q |
1 |
gggaggtaatgaagaacaaggtgaaaaagaagaatttttgtcagttaagagctgtttctcaatgtattcttctagtgcaaatggggaaggattttattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6037122 |
gggaggtaatgaagaacaaggtgaaaaagaagaatttttgtcagttaagagctgtttctcaatgtattcttcaagtgcaaatggggaaggattttattct |
6037221 |
T |
|
| Q |
101 |
gtgaagactaacctttcaagatgttcaagcttgaatgagtttgatttgtcggaatattggaagcgttctataattcaggagttttgtcattgtgaaggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037222 |
gtgaagactaacctttcaagatgttcaagcttgaatgagtttgatttgtcggaatattggaagcgttctataattcaggagttttgtcattgtgaaggat |
6037321 |
T |
|
| Q |
201 |
ggcctttcggtctctgtcgtaaagctgtgttacttccaccactgcctaagtcaccatctgaatcatggttgtatcgtaaaatactatcaagtaccaaagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037322 |
ggcctttcggtctctgtcgtaaagctgtgttacttccaccactgcctaagtcaccatctgaatcatggttgtatcgtaaaatactatcaagtaccaaagt |
6037421 |
T |
|
| Q |
301 |
tacttgaatttttatgaatgtactttattgttgtttcgtattctgattaaagccaaaaatgtaagaatcagaactagttgaacattattgaataaggaat |
400 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6037422 |
tacttgaatttttatgaatgtactttattgttttctcgtattctgattaaagccagaaatgtaagaatcagaactggttgaacattattgaataaggaat |
6037521 |
T |
|
| Q |
401 |
agcacaagctttgaaaacagactat |
425 |
Q |
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| T |
6037522 |
agcacaagctttgaaaacagactat |
6037546 |
T |
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