View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_1 (Length: 769)
Name: NF15228_low_1
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 38 - 473
Target Start/End: Complemental strand, 1314745 - 1314310
Alignment:
| Q |
38 |
gtaatacgttgacagtaggagtaactctgagatgatttactccgcttaataattcattataaacattgaatttccctaatccaactcactgattgcaatc |
137 |
Q |
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| T |
1314745 |
gtaatacgttgacagtaggagtaactctcagatgatttactccgcttaataattcattataaacattgaatttccctaatccaactcactgattgcaatc |
1314646 |
T |
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| Q |
138 |
tccaactatcttaaatacacaatttcaatacatgcatgtgaatgttataaaattttctttaatccaagcaaatgttgattgacaaaataagcacatatta |
237 |
Q |
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| T |
1314645 |
tccaactatcttaaatacacaatttcaatacatgcatgtgaatgttataaaattttctttaatccaaccaaatgttgattgacaaaataagcacatatta |
1314546 |
T |
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| Q |
238 |
actttgagaaaatggcaatagcaaagcttacttacttcaaggtggaattccttttccacaacaccaacagaaacccctccatgacgcgctccaacaagca |
337 |
Q |
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| T |
1314545 |
actttgagaaaatggcaatagcaaagcttacttacttcaaggtggaattccttttccacaacaccaacagaaacccctccatgacgcgctccaacaagca |
1314446 |
T |
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| Q |
338 |
tgacagaacaaatccatatgagcttctctaacatctgcttttgaaatgcttctttatccaaaacctggctttcaagacagatcagcacatgacttatcta |
437 |
Q |
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| T |
1314445 |
tgacagaacaaatccatatgagcttctctaacatctgcttttgaaatgcttctttatccaaaacctggctttcaagacagatcagcacatgacttatcta |
1314346 |
T |
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| Q |
438 |
tttcaagttaattatgaaaaaattctcaacaaacac |
473 |
Q |
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| T |
1314345 |
tttcaagttaattatgaaaaaattctcaacaaacac |
1314310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 539 - 765
Target Start/End: Complemental strand, 1314243 - 1314017
Alignment:
| Q |
539 |
ccctctaatcttaggaaaccaacatctaagatagaaaaataacggatgagaattatcagagtcagagaaaacactcctttcatgccgtcgctaaattgaa |
638 |
Q |
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| T |
1314243 |
ccctctaatcttaggaaaccaacatctaagatagaaaaataacggatgagaattatcagagtcagagaaaacactcctttcatgccgtcgctaaatcaaa |
1314144 |
T |
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| Q |
639 |
accgctgaatgaagtttggatgactcctaattcaagtttatttttcaaatctgatttacaaagcttaaatcatgagccaaatgatcttcatctaaagatt |
738 |
Q |
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| T |
1314143 |
accgctgaatgaagattggatgactcctaattcaagtttatttttcaaatctgatttacaaatctcaaatcatgagccaaatgatcttcatctaaagatt |
1314044 |
T |
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| Q |
739 |
ctgacttaaatggacccctatgctact |
765 |
Q |
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| T |
1314043 |
ctgacttaaatggaccccaatgatact |
1314017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 1314286 - 1314339
Alignment:
| Q |
56 |
gagtaactctgagatgatttactccgcttaataattcattataaacattgaatt |
109 |
Q |
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| T |
1314286 |
gagtaactatgagctgagttactcagcttaataactcattacaaacattgaatt |
1314339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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