View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15228_low_11 (Length: 441)
Name: NF15228_low_11
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 68 - 335
Target Start/End: Original strand, 31035849 - 31036117
Alignment:
| Q |
68 |
ttaatactgattaatctatgtcgggtaggtcacgcccaagggggctgtcactaaagcaaggg-ttttaggctcttaaattttataatattaaaatggaat |
166 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31035849 |
ttaatagtgattaatctatgtcgggtaggtcacgaccaagggggctgtcactaaagcaaggggttttaggctcttaaattttataatattaaaatggaat |
31035948 |
T |
|
| Q |
167 |
aaagtgtttattaagggaggaaaatatatattttttctaatatattttgcccaaaagaggagaagagtgtatgttttaatataatagagaatgaagtata |
266 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |
|
|
| T |
31035949 |
aaagtgtttattaagggtggaaaatatatatttttcctaatatattttgcccaaaagaggagaagattgtatgttttaacataatagagaatgaagtgta |
31036048 |
T |
|
| Q |
267 |
atttaatcatcactcaaaaaacggaagtataatgtactctatattgaaatattggtcaagagattttgt |
335 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31036049 |
atttaatcatcactcaagaaacggaagtataatgtactctatattgaaatattggtcaagagattttgt |
31036117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 68 - 335
Target Start/End: Original strand, 31028879 - 31029147
Alignment:
| Q |
68 |
ttaatactgattaatctatgtcgggtaggtcacgcccaagggggctgtcactaaagcaaggg-ttttaggctcttaaattttataatattaaaatggaat |
166 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31028879 |
ttaatagtgattaatctatgtcgggtaggtcacgaccaagggggctgtcactaaagcaaggggttttaggctcttaaattttataatattaaaatggaat |
31028978 |
T |
|
| Q |
167 |
aaagtgtttattaagggaggaaaatatatattttttctaatatattttgcccaaaagaggagaagagtgtatgttttaatataatagagaatgaagtata |
266 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| || |
|
|
| T |
31028979 |
aaagtgtttattaagggtggaaaatatatatttttcctaatatattttgcccaaaagaggagaagattgtatgttttaacataatagagaatgtagtgta |
31029078 |
T |
|
| Q |
267 |
atttaatcatcactcaaaaaacggaagtataatgtactctatattgaaatattggtcaagagattttgt |
335 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31029079 |
atttaatcatcactcaagaaacggaagtataatgtactctatattgaaatattggtcaagagattttgt |
31029147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31028784 - 31028847
Alignment:
| Q |
1 |
attattctccaattactctcggcaaatattttttactatgatatttgtacgaaatttttacttc |
64 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31028784 |
attaatctccaattactctcgccaaatattttttactatgatattagtacgaaatttttacttc |
31028847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31035754 - 31035817
Alignment:
| Q |
1 |
attattctccaattactctcggcaaatattttttactatgatatttgtacgaaatttttacttc |
64 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31035754 |
attaatctccaattactctcgccaaatattttttactatgatattagtacgaaatttttacttc |
31035817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 31041101 - 31041140
Alignment:
| Q |
149 |
ataatattaaaatggaataaagtgtttattaagggaggaaa |
189 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31041101 |
ataatattaaa-tggaataaagtgtttattaagggaggaaa |
31041140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 31026242 - 31026307
Alignment:
| Q |
265 |
taatttaatcatcactcaaaaaacggaagtataatgtactctatattgaaatattggtcaagagat |
330 |
Q |
| |
|
|||||||| ||||| |||| || | ||||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
31026242 |
taatttaagcatcattcaagaactgaaagtataatgtactctacatcgaaatattggtaaagagat |
31026307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 31041162 - 31041223
Alignment:
| Q |
184 |
aggaaaatatatattttttctaatatattttgcccaaaagaggagaagagtgtatgttttaa |
245 |
Q |
| |
|
|||| |||||||| | ||| ||||||||| ||| ||||||| |||||||| ||||||||||| |
|
|
| T |
31041162 |
aggagaatatatactatttttaatatattgtgcacaaaagaagagaagagcgtatgttttaa |
31041223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 48572937 - 48572901
Alignment:
| Q |
101 |
gcccaagggggctgtcactaaagcaagggttttaggc |
137 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
48572937 |
gcccaaggaggctgccactaaagcaagggttttaggc |
48572901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 26662743 - 26662695
Alignment:
| Q |
152 |
atattaaaatggaataaagtgtttattaagggaggaaaatatatatttt |
200 |
Q |
| |
|
||||||||||||| |||| | ||||| ||||||| |||||||||||||| |
|
|
| T |
26662743 |
atattaaaatggactaaaatatttatgaagggagaaaaatatatatttt |
26662695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University