View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_19 (Length: 295)
Name: NF15228_low_19
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 4975680 - 4975401
Alignment:
| Q |
1 |
aacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggtattatcaattcagtc |
100 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
4975680 |
aacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggtattatcaattgagtc |
4975581 |
T |
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| Q |
101 |
ggactttatggacaattgtcgagnnnnnnnngaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcatcct |
200 |
Q |
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||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4975580 |
ggattttatggacaattgtcgagaaaaaaaagaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcatcct |
4975481 |
T |
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| Q |
201 |
gctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaat |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4975480 |
gctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaat |
4975401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 4993588 - 4993309
Alignment:
| Q |
1 |
aacactatttaaaaacttgcgcacataaaagggagattttgagtttgaactcggttaactaaaatgttcagttaacaatttcggtattatcaattcagtc |
100 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
4993588 |
aacactacttaaaaacttgcacacataaaagggagattttgagtttgaactcgattaactaaaatgttcagtttacaatttcggtattatcaattgagtc |
4993489 |
T |
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| Q |
101 |
ggactttatggacaattgtcgagnnnnnnnngaatattgcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcatcct |
200 |
Q |
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||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993488 |
ggattttatggacaattgtcgagaaaaaaaagaatatagcataaaaatgttatttgaaaaatgtatgtaccttcccttagtttagttatttattcatcct |
4993389 |
T |
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| Q |
201 |
gctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaat |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993388 |
gctcaacaataattgtattgtcttgatcttactctacctcctcagcatcagaatagatgtcttctaacttatgaataaat |
4993309 |
T |
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