View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_21 (Length: 293)
Name: NF15228_low_21
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_21 |
 | |
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| [»] scaffold0927 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 26314683 - 26314960
Alignment:
| Q |
1 |
aatttttgccactgaatatatgacatctgggaatttttcatccaagatatcaattgtctcctttgttatgccatggacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
26314683 |
aattttcgccactgaatatatgacatttgggaatttttcatccaagatatcaattgtctcctttgttataccatgaacatgatccaacaggaagaatgca |
26314782 |
T |
|
| Q |
101 |
tgttcaagcacaacatgcactccagtgctcacaattccattgttcaagtaatcgtctgcccttggtaagtgaccagaattcaaccaatgagcctcttcca |
200 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
26314783 |
tgtacaagcacaacatgcactccggtgctcacaattccattgttcaagtaatcctctgccctcggtaagtggccagaattcaaccaatgagcctcttcca |
26314882 |
T |
|
| Q |
201 |
tgaaagcgttcaataagcgtatccactgtttcgtccaaat-aattttatatatactcagccatttgaaagaataattt |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||| |
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|
| T |
26314883 |
tgaaagcgttcaataagcgtatccactgtttcacccaaatcatttttacatatactcagccatttgaaagaataattt |
26314960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 28566795 - 28567026
Alignment:
| Q |
1 |
aatttttgccactgaatatatgacatctgggaatttttcatccaagatatcaattgtctcctttgttatgccatggacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |
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|
| T |
28566795 |
aatttttgccactgaatatataacatttgggaaattttcatccaagatatcaattgtctcctttgttataccactaacatgatccaaaaggaagaatgca |
28566894 |
T |
|
| Q |
101 |
tgttcaagcacaacatgcactccagtgctcacaattccattgttcaagtaatcgtctgcccttggtaagtgaccagaattcaaccaatgagcctcttcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28566895 |
tgttcaagcacaacatgcactccagtgctcactattccattgtttaagtaatcctctgcttttggtaagtgaccagaattcaaccaatgagcctcttcca |
28566994 |
T |
|
| Q |
201 |
tgaaagcgttcaataagcgtatccactgtttc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28566995 |
tgaaagcgttcaataagcgtatccactgtttc |
28567026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 28584770 - 28585046
Alignment:
| Q |
1 |
aatttttgccactgaatatatgacatctgggaatttttcatccaagatatcaattgtctcctttgttatgccatggacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
28584770 |
aatttttgccactgaatatatgacatttggaaacttttcatccaagatatcaattgtttgctttgttataccattaacatgatccaacaggaagaatgca |
28584869 |
T |
|
| Q |
101 |
tgttcaagcacaacatgcactccagtgctcacaattccattgttcaagtaatcgtctgcccttggtaagtgaccagaattcaaccaatgagcctcttcca |
200 |
Q |
| |
|
||| |||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| |||| |
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|
| T |
28584870 |
tgtataagcacaacatgaactccagtgctcacgattccattattcaagtaatcctctgcccttggcaggtgactagaattcaaccaatgagcctcctcca |
28584969 |
T |
|
| Q |
201 |
tgaaagcgttcaataagcgtatccactgtttcgtccaaataattttatatatactcagccatttgaaagaataattt |
277 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
28584970 |
tgaaagcgttcaataagagtacccactgtttcacgcaaataattttatatatactcagccatttgaaaacataattt |
28585046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 28573541 - 28573791
Alignment:
| Q |
1 |
aatttttgccactgaatatatgacatctgggaatttttcatccaagatatcaattgtctcctttgttatgccatggacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
28573541 |
aatttttgccactgaatatatgacatttggaaacttttcatccaagatatcaattgttttctttgttataccattaacatgatccaacaggaagaatgca |
28573640 |
T |
|
| Q |
101 |
tgttcaagcacaacatgcactccagtgctcacaattccattgttcaagtaatcgtctgcccttggtaagtgaccagaattcaaccaatgagcctcttcca |
200 |
Q |
| |
|
||| |||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||||| |
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|
| T |
28573641 |
tgtataagcacaacatgaactccagtgctcacgattccattattcaagtaatcctctgctcttggcaagtgtccagaattcaaccaatgggcctcttcca |
28573740 |
T |
|
| Q |
201 |
tgaaagcgttcaataagcgtatccactgtttcgtccaaataattttatata |
251 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| ||||||||| |
|
|
| T |
28573741 |
tgaaagcgttcaataagagtatccactgtttcgcacaaatatttttatata |
28573791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 20615876 - 20616107
Alignment:
| Q |
1 |
aatttttgccactgaatatatgacatctgggaatttttcatccaagatatcaattgtctcctttgttatgccatggacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||||||||||||||| |||| || ||| |||| |||||| |||||| || || ||||||||||| || | ||||||||| |||||||| ||| |
|
|
| T |
20615876 |
aatttttgccactgaataaatgatatttggaaattcttcatctaagatagaaagagtttcctttgttatacccttagcatgatccatgaggaagaaagca |
20615975 |
T |
|
| Q |
101 |
tgttcaagcacaacatgcactccagtgctcacaattccattgttcaagtaatcgtctgcccttggtaagtgaccagaattcaaccaatgagcctcttcca |
200 |
Q |
| |
|
|| ||| |||||||| ||||| |||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||||||| || |
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|
| T |
20615976 |
tggataagtacaacatgaactcctgtgctcacaattccattgttcaagtattcctctgttgttggtaaaataccagaattcaaccaatgagcctctttca |
20616075 |
T |
|
| Q |
201 |
tgaaagcgttcaataagcgtatccactgtttc |
232 |
Q |
| |
|
|||||| || |||||||| | |||||||||| |
|
|
| T |
20616076 |
agaaagcatttaataagcgcacccactgtttc |
20616107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 24070225 - 24070501
Alignment:
| Q |
1 |
aatttttgccactgaatatatgacatctgggaatttttcatccaagatatcaattgtctcctttgttatgccatggacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
24070225 |
aatttttgccaccgaatatatgacatttggaaatttttcatccaagatatcaactgtctcctttgttataccattaacatgatccaacaagaagaatgca |
24070324 |
T |
|
| Q |
101 |
tgttcaagcacaacatgcactccagtgctcacaattccattgttcaagtaatcgtctgcccttggtaagtgaccagaattcaaccaatgagcctcttcca |
200 |
Q |
| |
|
||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||| |||||||||||| |
|
|
| T |
24070325 |
tgtacaagcacaacatggactccggtgctcacaattccattgttcaagtaatcctctgcccttggcaaatgactagaattcaaccaacgagcctcttcca |
24070424 |
T |
|
| Q |
201 |
tgaaagcgttcaataagcgtatccactgtttcgtccaaataattttatatatactcagccatttgaaagaataattt |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||| | |||||| |
|
|
| T |
24070425 |
tgaaagcgttcaataagcgtatccactgtttcacccaaatagttttatatagactcagtcatttgaaaaattaattt |
24070501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 24080511 - 24080235
Alignment:
| Q |
1 |
aatttttgccactgaatatatgacatctgggaatttttcatccaagatatcaattgtctcctttgttatgccatggacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| || ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
24080511 |
aatttttgccaccgaatatatgacatttggaaaattttcatccaagatatcaactgtctcctttgttataccattaacatgatccaacaagaagaatgca |
24080412 |
T |
|
| Q |
101 |
tgttcaagcacaacatgcactccagtgctcacaattccattgttcaagtaatcgtctgcccttggtaagtgaccagaattcaaccaatgagcctcttcca |
200 |
Q |
| |
|
||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||| |||||||||||| |
|
|
| T |
24080411 |
tgtacaagcacaacatggactccggtgctcacaattccattgttcaagtaatcctctgcccttggcaaatgactagaattcaaccaacgagcctcttcca |
24080312 |
T |
|
| Q |
201 |
tgaaagcgttcaataagcgtatccactgtttcgtccaaataattttatatatactcagccatttgaaagaataattt |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
24080311 |
tgaaagcgttcaataagcgtatccactgtttcacccaaatagttttatatagactcagtcatttgaaaaaataattt |
24080235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 155 - 3
Alignment:
| Q |
1 |
aatttttgccactgaatatatgacatctgggaatttttcatccaagatatcaattgtctcctttgttatgccatggacatgatccaacaggaagaatgca |
100 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || |||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
155 |
aatttttgccactgaatatataacatttggaaaattttcatccaagatatcagttgtctcctttgttataccattaacatgatccaacaggaagaatgca |
56 |
T |
|
| Q |
101 |
tgttcaagcacaacatgcactccagtgctcacaattccattgttcaagtaatc |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
55 |
tgttcaagcacaacatgcactccagtgctcactattccgttgttcaagtaatc |
3 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 2602745 - 2602636
Alignment:
| Q |
80 |
tgatccaacaggaagaatgcatgttcaagcacaacatgcactccagtgctcacaattccattgttcaagtaatcgtctgcccttggtaagtgaccagaat |
179 |
Q |
| |
|
||||| || |||||||| ||||| |||| || ||||||||||| | ||| |||||||||||||| ||||| || |||||| |||| |||||||| |||| |
|
|
| T |
2602745 |
tgatcaaagaggaagaacgcatggacaagtaccacatgcactcctgggctaacaattccattgtttaagtactcatctgcctttggcaagtgacctgaat |
2602646 |
T |
|
| Q |
180 |
tcaaccaatg |
189 |
Q |
| |
|
||| |||||| |
|
|
| T |
2602645 |
tcagccaatg |
2602636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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