View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_23 (Length: 280)
Name: NF15228_low_23
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 3639764 - 3639934
Alignment:
| Q |
21 |
tagactggtgagtgatcttatggaccaaattgacagaaaaccaaaaggcatcctctcaaagttgtgggtgtcattaggatgttgtcattcctcccattct |
120 |
Q |
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| T |
3639764 |
tagactggtgagtgatcttatggaccaaattgacagaaaaccaataggcatcctctcaaagttgtgggtgtcattaggatgttgtcattcctcccattct |
3639863 |
T |
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| Q |
121 |
gacaatgttctaaatcctaagaatcctcaaattccaacttccaagtctctttgtcgagtaacttattagcc |
191 |
Q |
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| T |
3639864 |
gacaatgttctaaatcctaagaatccttaaattccaactgccaagtctatttgttgagtaacttactagcc |
3639934 |
T |
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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 3646673 - 3646739
Alignment:
| Q |
91 |
tcattaggatgttgtcattcctcccattctgacaatgttcta--aatcctaagaatcctcaaattcca |
156 |
Q |
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| T |
3646673 |
tcattaggatgctgtcattcctcccatttggaca-tgttctataaatcctaagaatcctcaaattcca |
3646739 |
T |
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