View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15228_low_26 (Length: 264)

Name: NF15228_low_26
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15228_low_26
NF15228_low_26
[»] chr1 (2 HSPs)
chr1 (19-253)||(10190789-10191023)
chr1 (19-234)||(10187849-10188064)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 10191023 - 10190789
Alignment:
Q  19 aagtggcataccaagtatacaaccagctgtttcaggatgtgtaggaccaaatttattcacaacaccaatagcatataaaattgaaaaataaaaacacttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10191023 aagtggcataccaagtatacaaccagctgtttcaggatgtgtaggaccaaatttattaacaacaccaatagcatataaaattgaaaaataaaaacacttg 10190924  T
Q  119 gttgaattttttggagcaatagtactaagctgagtagtaactttgaaaccagcatcagtacaaataccacagctagtttcagaactcaaatcaccattac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10190923 gttgaattttttggagcaatagtactaagctgagtagtaactttgaaaccagcatcagtacaaataccacagctagtttcagaactcaaatcaccattac 10190824  T
Q  219 aagcagtgtctaaaggacttaagataccaaccttt 253  Q
    |||||||||||||||||||||||||||||||||||    
T  10190823 aagcagtgtctaaaggacttaagataccaaccttt 10190789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 10188064 - 10187849
Alignment:
Q  19 aagtggcataccaagtatacaaccagctgtttcaggatgtgtaggaccaaatttattcacaacaccaatagcatataaaattgaaaaataaaaacacttg 118  Q
    |||||| |||||||||||||||| |||||   |||||| |||||||||||| | |||||||| ||||||||||||||||| ||||||  |||| |||||     
T  10188064 aagtgggataccaagtatacaactagctgcagcaggatctgtaggaccaaaatgattcacaataccaatagcatataaaactgaaaagaaaaagcactta 10187965  T
Q  119 gttgaattttttggagcaatagtactaagctgagtagtaactttgaaaccagcatcagtacaaataccacagctagtttcagaactcaaatcaccattac 218  Q
    |||| |||||||||| ||||| |  ||||||||| ||| |||||||||||||||||||| || || |  || || || || ||  |||||||||| ||||    
T  10187964 gttgcattttttggatcaatacttgtaagctgagaagtgactttgaaaccagcatcagtgcacatgctgcaactggtgtccgatttcaaatcacctttac 10187865  T
Q  219 aagcagtgtctaaagg 234  Q
    ||| ||||||||||||    
T  10187864 aagaagtgtctaaagg 10187849  T

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