View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15228_low_27 (Length: 253)
Name: NF15228_low_27
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 51 - 232
Target Start/End: Complemental strand, 12306394 - 12306213
Alignment:
| Q |
51 |
agcattagcataacaccaagtagttgtatgaagaagcatcaagtatcatcacctcttccatatgtnnnnnnntcttattccttcgactccgaatattatc |
150 |
Q |
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| T |
12306394 |
agcattagcataacaccaagtagttgtatgaagaagcatcaagtatcatcacctcttccatatgcaaaaaaatcttattccttcgactccgaatattatc |
12306295 |
T |
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| Q |
151 |
ctgaatttcttgaagttccatcttagcaaaatcttgtacagtttcaggtccttctataatacaaaacctgcgttcaaaacaa |
232 |
Q |
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| T |
12306294 |
ctgaatttcttgaagttccatcttagcaaaatcttgtacagtttcaggtccttctataatacaaaacctgcgttcaaaacaa |
12306213 |
T |
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