View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15228_low_3 (Length: 633)
Name: NF15228_low_3
Description: NF15228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15228_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 560; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 11 - 594
Target Start/End: Original strand, 3789124 - 3789707
Alignment:
| Q |
11 |
catcatcaccaactacttgatccaccttcttatttatctcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789124 |
catcatcaccaactacttgatccaccttcttctttatctcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatc |
3789223 |
T |
|
| Q |
111 |
acaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggtacaccggcatgtacaccttcaatggtggaattccatccacag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789224 |
acaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggtacaccggcatgtacaccttcaatggtggaattccatccacag |
3789323 |
T |
|
| Q |
211 |
tgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaacaattttacctttacttccatggaagtcattagggtatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789324 |
tgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaacaattttacctttacttccatggaagtcattagggtatg |
3789423 |
T |
|
| Q |
311 |
tatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttggtc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789424 |
tatagtttaccttattgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttggtc |
3789523 |
T |
|
| Q |
411 |
cattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttccataatgaactt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3789524 |
cattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccattctaagcaagttgagtcttcttgccataatgaactt |
3789623 |
T |
|
| Q |
511 |
ttgttgttgttactttccatcaatggaccaattggtaggaactttggtgatatggaaaatacaccaggttcaagatcacaagta |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3789624 |
ttgttgttgttactttccatcaatggaccaattggtaggaactttggtgatatggaaaatacaccaggctcaagatcacaagta |
3789707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 11 - 594
Target Start/End: Complemental strand, 3800983 - 3800400
Alignment:
| Q |
11 |
catcatcaccaactacttgatccaccttcttatttatctcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatc |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3800983 |
catcatcaccaactacttgatacaccttcttctttatctctttccttgatatataaccatcatcatctttctctaattcaagtccagtcttccacacatc |
3800884 |
T |
|
| Q |
111 |
acaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggtacaccggcatgtacaccttcaatggtggaattccatccacag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
3800883 |
acaaatatacgatttattgagaaattgatcaactgaaaatggccaacacaagaaaggtacaccagcatgtacaccttctatggtagaattccatccacaa |
3800784 |
T |
|
| Q |
211 |
tgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaacaattttacctttacttccatggaagtcattagggtatg |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3800783 |
tgacttataaagcaagcaatggctggatgattcaatattttactttgtggtgcccaaccaacaattttacctttacttccatggaagtcattagggtatg |
3800684 |
T |
|
| Q |
311 |
tatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttggtc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3800683 |
tatagtttaccttattgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttggtc |
3800584 |
T |
|
| Q |
411 |
cattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttccataatgaactt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3800583 |
cattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttcttgccataatgaactt |
3800484 |
T |
|
| Q |
511 |
ttgttgttgttactttccatcaatggaccaattggtaggaactttggtgatatggaaaatacaccaggttcaagatcacaagta |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3800483 |
ttgttgttgttactttccatcaatggaccaattggtaggaactttggtgatatggaaaatacaccaggctcaagatcacaagta |
3800400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 73 - 566
Target Start/End: Original strand, 3767850 - 3768343
Alignment:
| Q |
73 |
tcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggtacac |
172 |
Q |
| |
|
||||| || |||||||||| |||| ||||||||||||||||||||| || || || ||||||||||||| |||||||||||| |||||||||| || |
|
|
| T |
3767850 |
tcatccttgtctaattcaaatccaaccttccacacatcacaaatatatgacttgttcgtaaattgatcagttgcaaatggccaacataagaaaggtatac |
3767949 |
T |
|
| Q |
173 |
cggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaac |
272 |
Q |
| |
|
| | || ||||||||| || || |||||||| ||||| ||||| ||||| ||||| || || |||||||||||||| || | || ||| |||||| ||| |
|
|
| T |
3767950 |
cagaatatacaccttctatagtagaattccaaccacaatgactaatgaaacaagctatagcaggatggttcaatatcttcttctgcggtacccaactaac |
3768049 |
T |
|
| Q |
273 |
aattttacctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaaga |
372 |
Q |
| |
|
|| || |||||| |||| |||| |||| |||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
3768050 |
gatctttcctttagttccgaggaattcatcagggtatgcatagtttaccttgttgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaaga |
3768149 |
T |
|
| Q |
373 |
tcaagtcctagggctagttcattaaattggttttggtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaacc |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||| | || ||| ||||||| || |
|
|
| T |
3768150 |
tcaagtcctagggctagttcattaaattggttttggtccattactgccaaactaccgaaggaaacatatacgaccgattgtgatggttgcttatctagcc |
3768249 |
T |
|
| Q |
473 |
aatctaagcaagttgagtcttctttccataatgaacttttgttgttgttactttccatcaatggaccaattggtaggaactttggtgatatgga |
566 |
Q |
| |
|
|||||||| |||| |||||||| ||| ||||||||||||||| | | | ||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
3768250 |
aatctaaggaagtcatgtcttcttgccagaatgaacttttgttgctatcattttccatcaatgggccaattggtaggaactttggtgagatgga |
3768343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 67 - 570
Target Start/End: Original strand, 3780122 - 3780625
Alignment:
| Q |
67 |
ccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaag |
166 |
Q |
| |
|
||||| ||||| || |||| |||||||||| ||||||||||||||||| ||| || || || | |||||||||| ||| |||||||||||||||| |
|
|
| T |
3780122 |
ccatcttcatccttgtctagttcaagtccaaccttccacacatcacaaacatatgacttgttcataaattgatcaccgtgaaacggccaacacaagaaag |
3780221 |
T |
|
| Q |
167 |
gtacaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgccca |
266 |
Q |
| |
|
|||||||| || ||||||||| | ||| ||||||||||| || ||||| ||||| |||||||| || || ||||||||||| || |||| || ||||| |
|
|
| T |
3780222 |
gtacaccgctatatacaccttctacggtagaattccatccgcaatgactaatgaaacaagcaatagcagggtggttcaatatcttcttttgcggcgccca |
3780321 |
T |
|
| Q |
267 |
accaacaattttacctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtca |
366 |
Q |
| |
|
|||||||| || |||||| ||||| | || |||| |||||||| ||||||||||||||| ||||| || ||||| |||||||| | |||||| || ||| |
|
|
| T |
3780322 |
tccaacaatctttcctttagttccaagaaattcatcagggtatgcatagtttaccttattatcattgctcggacgaacaacccaaataaaaggtttatca |
3780421 |
T |
|
| Q |
367 |
agaagatcaagtcctagggctagttcattaaattggttttggtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttat |
466 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||||||||| | || || |
|
|
| T |
3780422 |
agaagatcaagtcctaaagctagttcgttaaattggttttggtccattacggccaaactaccaaaggaaacatatgcgacggattgaggtggatattgat |
3780521 |
T |
|
| Q |
467 |
ctaaccaatctaagcaagttgagtcttctttccataatgaacttttgttgttgttactttccatcaatggaccaattggtaggaactttggtgatatgga |
566 |
Q |
| |
|
| | ||||||||| || |||| |||||||| ||| ||||||||| |||||| | || ||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3780522 |
cgagccaatctaaacatgttgcgtcttcttgccagaatgaacttgtgttgtcttcgattgacatgaatggaccaattggtagaaactttggtgatatgga |
3780621 |
T |
|
| Q |
567 |
aaat |
570 |
Q |
| |
|
|||| |
|
|
| T |
3780622 |
aaat |
3780625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 568
Target Start/End: Original strand, 3755472 - 3755700
Alignment:
| Q |
343 |
acaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttggtccattactaccaagctaccaaaggaaacatata |
442 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||| ||||| |||| ||| || ||||| ||| | | ||| || || |||||||| |||||||||| |
|
|
| T |
3755472 |
acaacccaaagaaaaggcctttcaagaagatcaagccctagagctaattctttgaattgatttggaccaattgatattaaactaccaaatgaaacatata |
3755571 |
T |
|
| Q |
443 |
tgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttccataatgaacttttgttgttgtt---actttccatcaatggacc |
539 |
Q |
| |
|
|||| |||| ||||| | || ||||||||| |||| ||| ||| ||||||| ||| || || | ||||||| | | ||||||| |||||||| |
|
|
| T |
3755572 |
tgacagatttaggtggatattgatctaaccattctatgcatgtttcatcttcttgccacaaagatcccatgttgttatgctcattttccattaatggacc |
3755671 |
T |
|
| Q |
540 |
aattggtaggaactttggtgatatggaaa |
568 |
Q |
| |
|
||||||||| || |||||||||| ||||| |
|
|
| T |
3755672 |
aattggtagaaattttggtgataaggaaa |
3755700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 170
Target Start/End: Original strand, 3755159 - 3755299
Alignment:
| Q |
30 |
atccaccttcttatttatctcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattg |
129 |
Q |
| |
|
|||||||||||| ||||||||| | ||| ||| ||||||| ||||| || || ||| | | |||| |||||| |||||||||||||| | || || |
|
|
| T |
3755159 |
atccaccttcttctttatctctccctttgttattaatccattttcatccttttcaaatcccaatccaaccttccaaacatcacaaatatatgtcttgttc |
3755258 |
T |
|
| Q |
130 |
agaaattgatcagttaaaaatggccaacacaagaaaggtac |
170 |
Q |
| |
|
| || ||||||| | ||||||||| ||||||| |||||||| |
|
|
| T |
3755259 |
ataagttgatcactaaaaaatggcaaacacaacaaaggtac |
3755299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University